Rebuild the FTP partition locally (with symlinks) + Replaced the FTP link with the local repository

README.md

@@ -3,13 +3,13 @@ TODO
 - Apache different ports for each base, e.g. 8081 for UCNEbase, 8082 for EPD
 - MySQL conf in a container?
 - /data/download/clusters/galGal3_subclusters.txt is missing
-- FTP links, and issues with the FTP protocol
 - Set local all external JS/CSS calls
 - How to set https certificate in the container???
 - How to preserve links to/from UCSC genome???
 
 
 DONE
+- Replaced the FTP link by a local directory (because of issues with the FTP protocol)
 - Found missing /ucne/UCNE_subclusters_*.xls file on the FTP partition
 - Add current MySQL dump download
 - Some .htaccess files are there! Maybe move the content to the main apache conf, or move the folder elsewhere!

conf/sib.swiss--UCNEbase.apache.conf

@@ -84,6 +84,13 @@
     Options FollowSymLinks
     Require all denied
   </Directory>
+
+  <Directory "/var/vhosts/sib.swiss/UCNEbase/htdocs/data/ftp">
+    AllowOverride None
+    Options +FollowSymLinks +Indexes
+    Require all granted
+  </Directory>
+
   # Example of how to use the 'tools/' directory to include an external
   # framework into your URL tree:
   #

htdocs/data/download/custom_tracks_UCSC/UCNEs_anoCar2.bed

+../../UCNEs_anoCar2.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_braFlo1.bed

+../../UCNEs_braFlo1.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_chrPic1.bed

+../../UCNEs_chrPic1.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_ci2.bed

+../../UCNEs_ci2.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_danRer7.bed

+../../UCNEs_danRer7.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_fr2.bed

+../../UCNEs_fr2.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_gasAcu1.bed

+../../UCNEs_gasAcu1.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_gg3.bed

+../../UCNEs_gg3.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_hg19.bed

+../../UCNEs_hg19.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_mm10.bed

+../../UCNEs_mm10.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_monDom5.bed

+../../UCNEs_monDom5.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_ornAna1.bed

+../../UCNEs_ornAna1.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_oryLat2.bed

+../../UCNEs_oryLat2.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_petMar1.bed

+../../UCNEs_petMar1.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_strPur2.bed

+../../UCNEs_strPur2.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_taeGut1.bed

+../../UCNEs_taeGut1.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_tetNig2.bed

+../../UCNEs_tetNig2.bed
\ No newline at end of file

htdocs/data/download/custom_tracks_UCSC/UCNEs_xenTro3.bed

+../../UCNEs_xenTro3.bed
\ No newline at end of file