
    fps2sga.pl [options] <FPS file>

        where options are:
        -h|--help                Show this stuff
        -f|--feature <feature>   Set Feature name <feature>
        -s|--species <species>   Assembly <species> (i.e hg18)
        -x                       Generate an extended SGA file with the
        6th field equal to the FPS 'description' field
        --ignore0flag            Ignore 0 flag at position 29 of the FP line,
        so keep orientation the same as original

