IMMUCAN output format
Output format specifications for IMMUCAN:
-
sample_name
directory: data for each sample is stored in a directory named after the sample. Each directory contains 2 files:- sample name +
_cell_seg_data.txt
: cell segmentation data. REMOVE sample_name col. - REMOVE: sample name +
_tissue_seg_data_summary.txt
: tissue segmentation data. - sample name +
_summary_statistics.txt
: summary table (i.e. content of_summary_table.txt
with only the following columns: "tissue_type", "cell_type", "surface_mm2", "cell_density", "cell_count". And only with the rows corresponding to the total sample (i.e. no need for the per-imageID values.
- sample name +
-
parameters.txt
: input parameters. -
log.txt
: log of messages/warning generated during the processing.
No .xlsx
file.