Commit a3d1a97e authored by aneves's avatar aneves
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Update typos README.md

parent 30592f66
......@@ -137,19 +137,19 @@ This will run the spsp script at 5 AM every day of the week using the automatic
1) Check that the `outbox`, `sent` and `logs` folders exist.
2) Create a log file using the current date
3) Check if the connection to SPSP works
4) Scan the directory for any folder (ignoring `outbox`, `sent` and `logs`), if one is found, check that it contains `.fastq` or `.fastq.gz` and `.xlsx` files
4) Scan the directory for any folder (ignoring `outbox`, `sent` and `logs`); if one is found, check that it contains `.fastq` or `.fastq.gz` and `.xlsx` files
5) Compress the folder to tar.gz and move it to `outbox`, then delete the initial folder
6) Then for every file inside `outbox`, sign the file using SHA-256
7) Encrypt the file using SPSP public key and delete initial unencrypted compressed file
8) Transfer `.sha256` (signature) and `.gpg` (encrypted tar.gz) files and then move them to `sent` folder
7) Encrypt the file using the SPSP public key and delete the initial unencrypted compressed file
8) Transfer `.sha256` (signature) and `.gpg` (encrypted tar.gz) files and then move them to the `sent` folder
If an error occurs during the process, the script will output the error in the log file and will automatically stop to avoid any more errors.
Keep in mind, that in the CRON task we are returning the output of the automatic mode of the script inside a file called `spsp.log`. This should be your starting point to check if any error occured. Then, you can check the log file inside the `logs` folder for more information.
Keep in mind that in the CRON task, we are returning the output of the automatic mode of the script inside a file called `spsp.log`. This should be your starting point to check if any error occured. Then, you can check the log file inside the `logs` folder for more information.
Also, be sure that when you copy the `fastq` or `fastq.gz` files inside the directory, the process should be completed before 5 AM, or the script will send incomplete folder.
Also, be sure that when you copy the `fastq` or `fastq.gz` files inside the directory, the process should be completed before 5 AM, or the script will send an incomplete folder.
Finally, as files may be quite large (several Gb per file). It is up to you to decide if all the archives should stay inside the `sent` folder (default behavior).
Finally, as files may be quite large (several Gb per file), it is up to each institution to decide if all the archives should be kept inside the `sent` folder (default behavior).
## Authors
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