Commit 432fa2fe authored by Michael Baudis's avatar Michael Baudis
Browse files

comment formatting

parent 8b1e6d86
......@@ -9,9 +9,9 @@ info['info']['info']['datasets'].forEach(function(dataset){
});
var referenceMap = {
'GRCh38': 'SEGMENTS_HG38',
'GRCh36': 'SEGMENTS_HG18',
'GRCh37': 'SEGMENTS_HG19',
'GRCh36': 'SEGMENTS_HG18'
'GRCh38': 'SEGMENTS_HG38'
};
//correspondence to arraymap class
......@@ -21,8 +21,8 @@ var alternateBasesMap = {
};
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var defaultReference = 'GRCh38';
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var defaultReference = 'GRCh36';
function checkPreconditions(params) {
......@@ -381,4 +381,4 @@ function checkDatasetIdentifiers(userDatasetIdentifiers, allDatasetIdentifiers)
module.exports.checkPreconditions = checkPreconditions;
module.exports.buildMongoQuery = buildMongoQuery;
module.exports.checkResultAndGetResponse = checkResultAndGetResponse;
\ No newline at end of file
module.exports.checkResultAndGetResponse = checkResultAndGetResponse;
......@@ -25,9 +25,12 @@ var alternateBasesMap = {
"DUP": 1
};
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var defaultReference = 'GRCh38';
/*
By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
TODO Should it be the same as Maximilen? Is it specified through the Beacon documentaiton?
*/
var defaultReference = 'GRCh37';
function checkPreconditions(params) {
......@@ -367,4 +370,4 @@ function checkDatasetIdentifiers(userDatasetIdentifiers, allDatasetIdentifiers)
module.exports.checkPreconditions = checkPreconditions;
module.exports.buildMongoQuery = buildMongoQuery;
module.exports.checkResultAndGetResponse = checkResultAndGetResponse;
\ No newline at end of file
module.exports.checkResultAndGetResponse = checkResultAndGetResponse;
/**
/*
Created by sduvaud on 23/02/16.
modified by mbaudis on 2016-08-04
**/
*/
var matches = [];
var groupByQuery = db.samples.aggregate(
......
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