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ST
ga4gh-arraymap
Commits
432fa2fe
Commit
432fa2fe
authored
Aug 05, 2016
by
Michael Baudis
Browse files
comment formatting
parent
8b1e6d86
Changes
3
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beacon-app/arraymap-beacon/v0.3/beacon-query.js
View file @
432fa2fe
...
...
@@ -9,9 +9,9 @@ info['info']['info']['datasets'].forEach(function(dataset){
});
var
referenceMap
=
{
'
GRCh3
8
'
:
'
SEGMENTS_HG
3
8
'
,
'
GRCh3
6
'
:
'
SEGMENTS_HG
1
8
'
,
'
GRCh37
'
:
'
SEGMENTS_HG19
'
,
'
GRCh3
6
'
:
'
SEGMENTS_HG
1
8
'
'
GRCh3
8
'
:
'
SEGMENTS_HG
3
8
'
};
//correspondence to arraymap class
...
...
@@ -21,8 +21,8 @@ var alternateBasesMap = {
};
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var
defaultReference
=
'
GRCh3
8
'
;
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var
defaultReference
=
'
GRCh3
6
'
;
function
checkPreconditions
(
params
)
{
...
...
@@ -381,4 +381,4 @@ function checkDatasetIdentifiers(userDatasetIdentifiers, allDatasetIdentifiers)
module
.
exports
.
checkPreconditions
=
checkPreconditions
;
module
.
exports
.
buildMongoQuery
=
buildMongoQuery
;
module
.
exports
.
checkResultAndGetResponse
=
checkResultAndGetResponse
;
\ No newline at end of file
module
.
exports
.
checkResultAndGetResponse
=
checkResultAndGetResponse
;
beacon-app/arraymap-beacon/v0.4/beacon-query.js
View file @
432fa2fe
...
...
@@ -25,9 +25,12 @@ var alternateBasesMap = {
"
DUP
"
:
1
};
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var
defaultReference
=
'
GRCh38
'
;
/*
By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
TODO Should it be the same as Maximilen? Is it specified through the Beacon documentaiton?
*/
var
defaultReference
=
'
GRCh37
'
;
function
checkPreconditions
(
params
)
{
...
...
@@ -367,4 +370,4 @@ function checkDatasetIdentifiers(userDatasetIdentifiers, allDatasetIdentifiers)
module
.
exports
.
checkPreconditions
=
checkPreconditions
;
module
.
exports
.
buildMongoQuery
=
buildMongoQuery
;
module
.
exports
.
checkResultAndGetResponse
=
checkResultAndGetResponse
;
\ No newline at end of file
module
.
exports
.
checkResultAndGetResponse
=
checkResultAndGetResponse
;
mongo-queries/build-info.js
View file @
432fa2fe
/*
*
/*
Created by sduvaud on 23/02/16.
modified by mbaudis on 2016-08-04
**/
*/
var
matches
=
[];
var
groupByQuery
=
db
.
samples
.
aggregate
(
...
...
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