Commit 61a0e0fa authored by Severine Duvaud's avatar Severine Duvaud
Browse files

Remove GRCh36 for now, because the assembly does not seems to be in the MongoDB

parent de5c2644
......@@ -2,11 +2,17 @@ var info = require('./beacon-info.js').info
//check https://genome.ucsc.edu/FAQ/FAQreleases.html
var referenceMap = {
'GRCh38': 'SEGMENTS_HG38',
'GRCh37': 'SEGMENTS_HG19'
};
/*var referenceMap = {
'GRCh38': 'SEGMENTS_HG38',
'GRCh37': 'SEGMENTS_HG19',
'GRCh36': 'SEGMENTS_HG18'
};
*/
//correspondence to arraymap class
var alternateBasesMap = {
"DEL": -1,
......@@ -15,7 +21,7 @@ var alternateBasesMap = {
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var defaultReference = 'GRCh36';
var defaultReference = 'GRCh38';
function checkPreconditions(params) {
......
......@@ -15,7 +15,8 @@ arrayMap.config(['$routeProvider', '$locationProvider',
arrayMap.controller('BeaconController', ['$scope', '$location', function ($scope, $location) {
$scope.references = ['GRCh38','GRCh37','GRCh36'];
//$scope.references = ['GRCh38','GRCh37','GRCh36'];
$scope.references = ['GRCh38','GRCh37'];
$scope.config = {
"chromosome": "",
......
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