Do not allow minLength and maxLength to be compliant with 0.3

app/node-app/arraymap-beacon/v0.3/beacon-query.js

@@ -94,6 +94,8 @@ function checkPreconditions(params) {
         };
     }
 
+    // Do not allow minLength and maxLength to be compliant with 0.3
+    /*
     if (params.minlength && !Number(params.minlength)) {
         return {
             hasError: true,
@@ -106,7 +108,7 @@ function checkPreconditions(params) {
             hasError: true,
             msg: "max length not a number"
         };
-    }
+    }*/
 
     //TODO add additional checks
 
@@ -142,6 +144,8 @@ function buildMongoQuery(params) {
 
     var position = parseInt(params.start);
 
+    // Do not allow minLength and maxLength to be compliant with 0.3
+    /*
     if(params.alternateBases == 'DEL') {
 
         var minLength = params.minlength ? parseInt(params.minlength) : 0;
@@ -151,7 +155,7 @@ function buildMongoQuery(params) {
             minLength = 1;
         }
 
-    }
+    }*/
 
     var andConditions = [];
     var orConditions  = [];
@@ -180,6 +184,8 @@ function buildMongoQuery(params) {
     //elem match element
     var condElemMatch = condition[convertedReference]['$elemMatch'];
 
+    // Do not allow minLength and maxLength to be compliant with 0.3
+    /*
     if (minLength > 0) { //There is a minLength
         if (maxLength > 0) { //There is always a minLenght, if there is a max length specified (see code above)
             condElemMatch.SEGSIZE = { $gte: minLength,$lte: maxLength } // min. and max lengths
@@ -189,9 +195,10 @@ function buildMongoQuery(params) {
             condElemMatch.SEGSTART = position; // exact position
         }
     }else { //If there is a position specific
+    */
         condElemMatch.SEGSTOP = { $gte: position };
         condElemMatch.SEGSTART = { $lte: position };
-    }
+    //}
 
     andConditions.push(condition);
     if (orConditions.length > 0) {
@@ -219,7 +226,9 @@ function buildMongoQuery(params) {
 
 function checkResultAndGetResponse(params, datasets) {
 
-    var length = 0;
+    // Do not allow minLength and maxLength to be compliant with 0.3
+    // var length = 0;
+    /*
     if (typeof params.minlength != undefined && params.minlength != null && params.minlength != '')
     {
         length = parseInt(params.minlength);
@@ -233,7 +242,7 @@ function checkResultAndGetResponse(params, datasets) {
     {
         maxLength = parseInt(params.maxlength);
     }
-
+    */
     var responses = [];
 
     // The query returns only datasets for which there is at least one sample with at least one matching SEGMENT...
@@ -305,9 +314,12 @@ function checkResultAndGetResponse(params, datasets) {
         "start": params.start,
         "assemblyId": params.assemblyId,
         "datasetIds": params.datasetIds,
-        "alternateBases": params.alternateBases,
+        "alternateBases": params.alternateBases
+        // Do not allow minLength and maxLength to be compliant with 0.3
+        /*
         "length": length,
         "maxlength": maxLength
+        */
     };
 
     // BeaconAlleleResponse

app/node-app/public/js/index.js

@@ -22,9 +22,12 @@ arrayMap.controller('BeaconController', ['$scope', '$location', function ($scope
         "start": 34439881,
         "assemblyId": "GRCh38",
         "datasetIds": "8070/3",
-        "alternateBases": "DEL",
+        "alternateBases": "DEL"
+        // Do not allow minLength and maxLength to be compliant with 0.3
+        /*
         "minlength": '',
         "maxlength": ''
+        */
     };
 
 
@@ -41,9 +44,12 @@ arrayMap.controller('BeaconController', ['$scope', '$location', function ($scope
             "&start=" + conf.start +
             "&assemblyId=" + conf.assemblyId +
             "&datasetIds=" + conf.datasetIds +
-            ((conf.alternateBases === "") ? "all" : "&alternateBases=" + conf.alternateBases) +
+            ((conf.alternateBases === "") ? "all" : "&alternateBases=" + conf.alternateBases);
+            // Do not allow minLength and maxLength to be compliant with 0.3
+            /*
             ((conf.minlength === '') ? "" : "&minlength=" + conf.minlength) +
             ((conf.maxlength === '') ? "" : "&maxlength=" + conf.maxlength);
+            */
     };
 
     $scope.getInfoUrl = function () {

app/node-app/public/partials/beacon-home.html

@@ -47,6 +47,8 @@
                 </select>
             </div>
         </div>
+
+        <!-- Do not allow minLength and maxLength to be compliant with 0.3
         <div class="form-group">
             <label for="minlength" class="col-sm-2 control-label">Minimal length</label>
             <div class="col-sm-4">
@@ -59,7 +61,7 @@
             <div class="col-sm-4">
                 <input type="text" class="form-control" id="maxlength" ng-model="config.maxlength" placeholder="Max bases for the selected chromosome">
             </div>
-        </div>
+        </div>-->
 
         <div class="form-group">
             <div class="col-sm-offset-2 col-sm-8">