Beacon queries and interface for the MongoDB based _arrayMap_ cancer genome repository.
Beacon queries and interface for the MongoDB based _[arrayMap](http://arraymap.org/"arrayMap, visualizing cancer genome array data")_ cancer genome repository.
The structure of the project is the following:
Queries are contained inside the directory [mongo-queries](mongo-queries)
An alternative would be to transform the native _arrayMap_ data format into VCF, and to use [the Python Simple Beacon Server](https://github.com/maximilianh/ucscBeacon).
# mongo-queries:
Queries are contained inside the directory [mongo-queries](mongo-queries)
#### Download commands
The following command can be used to download a chunk of the _arrayMap_ dataset, e.g. to understand data structures.