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# Wasabi
**Web-based environment for evolutionary sequence analysis and data visualisation.**
Wasabi visualises sequence data together with a phylogenetic tree within a modern, user-friendly interface.
It automatically stores intermediate analysis steps with data sharing links, supports PRANK and PAGAN aligners and is extendable with plugins.
It automatically stores intermediate analysis steps with data sharing links, supports external databases and analysis tools, and is extendable with [Pline plugins](http://wasabiapp.org/pline).
For more information, visit [Wasabi homepage](http://wasabiapp.org) or read the [publication](http://mbe.oxfordjournals.org/content/early/2015/12/02/molbev.msv333).
## Setup
Wasabi can run both as a web service or standalone application, depending on the network setup
(web browser access by outside world).
Wasabi can run both as a web service or standalone application, depending on the network setup and startup settings
(see `default_settings.cfg` or `./wasabi_server.py --help`).
* Basic mode: open `index.html` in Wasabi folder
* Full mode: launch server module `python wasabi_server.py`
......@@ -14,6 +14,6 @@ Wasabi can run both as a web service or standalone application, depending on the
To cite Wasabi in publications, please use:
Veidenberg, A., Medlar, A. and Löytynoja, A. (2015) Wasabi: an integrated platform for evolutionary sequence analysis and data visualisation. Mol. Biol. Evol.
## Licence
Wasabi is open-source and licenced under the AGPL licence: [GNU homepage](http://www.gnu.org/licenses/agpl).
## License
Wasabi is open-source and licensed under the AGPL licence: [GNU homepage](http://www.gnu.org/licenses/agpl).
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