GitLab

Refactoring and cleanup. External tools (plugins) handling delegated to Pline. Custom Pline hooks via extensions. Local settings now sync with user account.

* Added tree editing tools (Tools=>Edit tree): tree node hiding, pruning, annotations (incl. scaling and colors), CodeML labels.
* Bug fixes, code cleaning.

 - JSON API additions ("version", "debug", "disable", "dirpath" option, syntax shorthands)
 - Selections can now change option groups/configurations (with two-way sync for value changes)
 - Bug fixes and improvements both client- and server side
* Python 3 support added for server code
* Dedicated Wasabi dataset ID input added to import dialog

* Added domain restriction option for import URLs (fixes #6)
* File export bugs (fixes #8, fixes #9, fixes #10)
* Other bug fixes (fixes #5, fixes #14, fixes #15, fixes #17)

View shared library folders without Wasabi user account. Bug fixes: popup menus, phyloxml annotation import.

* Tree rendering optimizations and tree label drawing bug fixes. Faster tree import and smaller memory footprint.

* New URL parameters for customizing Wasabi on launch ( see http://wasabiapp.org/rest ).
* Updated plugin API ( see http://wasabiapp.org/plugins )
* Added MAFFT aligner plugin
* bug fixes

* fixed tree coloring bugs
* tree branch/node/leafname coloring newick tags: C / BC = red / rgb(255,0,0) / 255.0.0 / #ff000
* global tree settings: custom metadata tag for leaf or node label, node spot size
* node-specific newick tags for overriding global settings: NL= S / GN / NHXtag (node/leaf label) CR=3/4/5... (node spot size)

* Added CORS and JSONP support for serverless cross-origin data import
* Better metadadata parsing from NHX trees (add custom tags via NewickMeta dictionary)
* Custom tree node and branch colors (PhyloXML "color" or NHX "C" and "BC" tags)
* Updated jQuery libraries

* Fixed: No link between tree and alignment if fasta header contains id and description (issue #1)
* Fixed: index.html file as an HTML attribute type (issue #2)
* Fixed: Load tree and msa files from 2 urls at the same time fails (issue #4)
* Fixed issues with tree rendering (branchlength overflow, 0-length branches, name tag positioning, metadata Ensembl links)
* Wasabi server: better handling of corrupt/missing metadata in analysis library

Bug fixes: plugin system, tree lost when saving. Added: "check" attribute to plugin system and Pagan plugin. Delete option in leaf menu with treeless import.

* Alignment position now retained after translation
* Bug fixes
* Changed licence from GPL to AGPL
* Added CITATION, README and LICENCE text files

* NEXUS file import and export (supports "trees", "matrix" and "translate" commands);
* import files without wasabi server (also with URL parameters "url=" or "file= ").
* Leaf color support (with newick tag "[&&NHX:C=color]" or PhyloXML "color" attribute)

Plugin system finished: delivery from plugins folder (+ Pagan relocation), support for positional arguments.

* Bug fixes. This is stable version with no known issues.
* New: plugin system. Pagan support reimplemented using plugin API (new interface, with placement mode).
* Anlaysis library updates: Create and share collections. Path view. Add metadata.
* Save dialog: store coloring/scroll position state
* Option for creating a temporary user account
* Smaller modifications (new "update alignment" notification etc.)

* New library breadcrumb

Added piwik analytics
Interface builder for Wasabi plugin API
Bug fixes

*Drag/drop library item move
*Folder sharing UI