diff --git a/app/node-app/app.js b/app/node-app/app.js index 1758c90eb432a5150024a5466bc3e6bc0aadc078..e9ea35d83830fe29c784a22342688c10c3140594 100644 --- a/app/node-app/app.js +++ b/app/node-app/app.js @@ -7,7 +7,7 @@ var bodyParser = require('body-parser'); var mongo = require('mongodb'); var mongojs = require('mongojs') -var db = mongojs('devmaster.vital-it.ch:27017/arraymap', ['samples']) +var db = mongojs('localhost:27017/arraymap', ['samples']) //var monk = require('monk'); //var db = monk('devmaster.vital-it.ch:27017/arraymap'); diff --git a/app/node-app/arraymap-beacon/v0.4/beacon-query.js b/app/node-app/arraymap-beacon/v0.4/beacon-query.js index 71a81939affd78f4778329d9bdbfe8622b5228ae..afcc41f6e823e93c89632393099ba8ecef20dec4 100644 --- a/app/node-app/arraymap-beacon/v0.4/beacon-query.js +++ b/app/node-app/arraymap-beacon/v0.4/beacon-query.js @@ -9,9 +9,9 @@ info['info']['info']['datasets'].forEach(function(dataset){ }); var referenceMap = { - 'GRCh38': 'SEGMENTS_HG38', - 'GRCh37': 'SEGMENTS_HG19', 'GRCh36': 'SEGMENTS_HG18' + 'GRCh37': 'SEGMENTS_HG19', + 'GRCh38': 'SEGMENTS_HG38', }; //correspondence to arraymap class @@ -21,8 +21,8 @@ var alternateBasesMap = { }; // By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt -//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton? -var defaultReference = 'GRCh38'; +//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton? +var defaultReference = 'GRCh36'; function checkPreconditions(params) { @@ -339,4 +339,4 @@ function checkDatasetIdentifiers(userDatasetIdentifiers, allDatasetIdentifiers) module.exports.checkPreconditions = checkPreconditions; module.exports.buildMongoQuery = buildMongoQuery; -module.exports.checkResultAndGetResponse = checkResultAndGetResponse; \ No newline at end of file +module.exports.checkResultAndGetResponse = checkResultAndGetResponse;