From e828dfbc8362427cd3feb03bb7a8eebca85b5874 Mon Sep 17 00:00:00 2001
From: Michael Baudis <mbaudis@gmail.com>
Date: Fri, 8 Jul 2016 21:14:55 +0200
Subject: [PATCH] default genome change to 36
---
app/node-app/app.js | 2 +-
app/node-app/arraymap-beacon/v0.4/beacon-query.js | 10 +++++-----
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/app/node-app/app.js b/app/node-app/app.js
index 1758c90..e9ea35d 100644
--- a/app/node-app/app.js
+++ b/app/node-app/app.js
@@ -7,7 +7,7 @@ var bodyParser = require('body-parser');
var mongo = require('mongodb');
var mongojs = require('mongojs')
-var db = mongojs('devmaster.vital-it.ch:27017/arraymap', ['samples'])
+var db = mongojs('localhost:27017/arraymap', ['samples'])
//var monk = require('monk');
//var db = monk('devmaster.vital-it.ch:27017/arraymap');
diff --git a/app/node-app/arraymap-beacon/v0.4/beacon-query.js b/app/node-app/arraymap-beacon/v0.4/beacon-query.js
index 71a8193..afcc41f 100644
--- a/app/node-app/arraymap-beacon/v0.4/beacon-query.js
+++ b/app/node-app/arraymap-beacon/v0.4/beacon-query.js
@@ -9,9 +9,9 @@ info['info']['info']['datasets'].forEach(function(dataset){
});
var referenceMap = {
- 'GRCh38': 'SEGMENTS_HG38',
- 'GRCh37': 'SEGMENTS_HG19',
'GRCh36': 'SEGMENTS_HG18'
+ 'GRCh37': 'SEGMENTS_HG19',
+ 'GRCh38': 'SEGMENTS_HG38',
};
//correspondence to arraymap class
@@ -21,8 +21,8 @@ var alternateBasesMap = {
};
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
-//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
-var defaultReference = 'GRCh38';
+//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
+var defaultReference = 'GRCh36';
function checkPreconditions(params) {
@@ -339,4 +339,4 @@ function checkDatasetIdentifiers(userDatasetIdentifiers, allDatasetIdentifiers)
module.exports.checkPreconditions = checkPreconditions;
module.exports.buildMongoQuery = buildMongoQuery;
-module.exports.checkResultAndGetResponse = checkResultAndGetResponse;
\ No newline at end of file
+module.exports.checkResultAndGetResponse = checkResultAndGetResponse;
--
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