Add extra information file for distribution

git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7177 95c5a404-1f88-0410-a6b0-c3f062b6f34a

AUTHORS

+FastCodeML has been coded by Mario Valle (mvalle@cscs.ch). This software has been developed in the HP2C Selectome project (http://www.hp2c.ch/projects/selectome/) by Marc Robinson-Rechavi, Nicolas Salamin, Heinz Stockinger (principal investigators) and Hannes Schabauer (project staff) at the University of Lausanne. Please contact marc.robinson-rechavi@unil.ch for inquiries.

BUGS

+Parameter optimizers other than "-m 22" are untested and might not converge properly.

CHANGELOG

+FastCodeML 1.1.0:
+- Few corrections to accept pipe character also in sequence names
+- New option to fixed branch lenghts (-bl)
+- New option fo manage easily number of threads (-nt)
+- Codeml optimizer is by default (-m 22)
+- Show branch lengths in default output
+- Show p0/p1/p2a/p2b & w0/kappa in default output
+- Display a warning if tree is rooted
+- Display FastCodemL version
+
+FastCodeML 1.0.1:
+- Added text files for LICENSE etc. Source files remain unchanged.
+- Version 1.0.1 contains additional information files, the sources are
+  unchanged with respect to 1.0.0.
+
+FastCodeML 1.0.0:
+- Initial release

HISTORY

-Versions:
-1.1.0
-	- Few corrections to accept pipe character also in sequence names
-	- New option to fixed branch lenghts (-bl)
-	- New option fo manage easily number of threads (-nt)
-	- Codeml optimizer is by default (-m 22)
-	- Show branch lengths in default output
-	- Show p0/p1/p2a/p2b & w0/kappa in default output
-	- Display a warning if tree is rooted
-	- Display FastCodemL version
-

LICENSE

+This file is part of FastCodeML. FastCodeML is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+FastCodeML is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
+
+However, if you find this software useful for your scientific publication, please cite
+M. Valle, H. Schabauer, C. Pacher, H. Stockinger, A. Stamatakis, M. Robinson-Rechavi, N. Salamin
+"Optimisation strategies for fast detection of positive selection on phylogenetic trees"
+published in Bioinformatics, Oxford University Press (2014).

THANKS

+We thank Sébastien Moretti and Walid Gharib for providing test datasets and feedback on FastCodeML.