Commit 3f7c0f9f authored by oshahmir's avatar oshahmir
Browse files

correcting compile option initializations in CMakeLists.txt to proper values (issue #33 and #34)

parent ab610d6b
......@@ -42,15 +42,15 @@ endif(Boost_FOUND)
# Get the configuration switches
OPTION(USE_LAPACK "Use BLAS/LAPACK" OFF)
OPTION(USE_MKL_VML "Use Intel MKL vectorized routines" OFF)
OPTION(USE_MKL_VML "Use Intel MKL vectorized routines" OFF) # could be removed ?
OPTION(USE_OPENMP "Compile with OpenMP support" ON)
OPTION(USE_MPI "Use MPI for high level parallelization" ON)
OPTION(USE_MPI "Use MPI for high level parallelization" OFF) # could be removed ?
if(NOT WIN32)
OPTION(BUILD_NOT_SHARED "Build FastCodeML not shared" OFF)
OPTION(BUILD_NOT_SHARED "Build FastCodeML not shared" OFF) # could be removed ?
endif(NOT WIN32)
OPTION(BUILD_SEARCH_MPI "Search for MPI installation?" OFF)
OPTION(USE_ORIGINAL_PROPORTIONS "Use the original CodeML proportion definition" OFF)
SET(USE_LIKELIHOOD_METHOD "Original" CACHE STRING "Select the type of likelihood computation method: Original, NonRecursive, FatVector, DAG")
OPTION(BUILD_SEARCH_MPI "Search for MPI installation?" OFF) # could be removed ?
OPTION(USE_ORIGINAL_PROPORTIONS "Use the original CodeML proportion definition" ON) # could be removed ?
SET(USE_LIKELIHOOD_METHOD "Original" CACHE STRING "Select the type of likelihood computation method: Original, NonRecursive, FatVector, DAG") # could be removed ?
SET_PROPERTY(CACHE USE_LIKELIHOOD_METHOD PROPERTY STRINGS Original NonRecursive FatVector DAG)
OPTION(USE_IDENTITY_MATRIX "Force identity matrix when time is zero" OFF)
OPTION(USE_CPV_SCALING "Scale conditional probability vectors to avoid under/overflow" ON)
......
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