- 11 Mar, 2016 5 commits
- 02 Mar, 2016 1 commit
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omid authored
master-eval. I am not confident with current formatting solution.
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- 29 Feb, 2016 1 commit
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omid authored
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- 03 Dec, 2015 4 commits
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Iakov Davydov authored
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Iakov Davydov authored
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Iakov Davydov authored
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Iakov Davydov authored
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- 26 Mar, 2015 3 commits
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Iakov Davydov authored
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Iakov Davydov authored
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Iakov Davydov authored
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- 27 Jun, 2014 1 commit
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kali authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7226 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 27 Mar, 2014 1 commit
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akalantz authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7205 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 24 Feb, 2014 1 commit
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7171 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 06 Feb, 2014 1 commit
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akalantz authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7157 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 30 Jan, 2014 1 commit
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akalantz authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7154 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 23 Jan, 2014 1 commit
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akalantz authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7149 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 21 Jan, 2014 1 commit
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akalantz authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7147 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 17 Dec, 2013 1 commit
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akalantz authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@7105 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 29 May, 2013 1 commit
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mvalle authored
Added maximization stop after given number of iterations. Added new cmd line options to define maximum number of iterations. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@6593 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 14 Feb, 2013 1 commit
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mvalle authored
Corrected help line for the -m option For the global optimizer set the timeout to 24 hours git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5926 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 07 Feb, 2013 1 commit
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mvalle authored
Rationalized include files Fixed CMakeLists for MPI on eiger git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5881 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 05 Feb, 2013 1 commit
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mvalle authored
Added print of no pre stop switch Fixed global scaling code git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5861 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 01 Feb, 2013 1 commit
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mvalle authored
Minor code cleaning. Minor message from exception cleaning. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5842 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 28 Jan, 2013 1 commit
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mvalle authored
Implemented initialize h0 from h1 also for MPI. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5831 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 24 Jan, 2013 2 commits
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5812 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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mvalle authored
Added switches to compute a range of branches Added branch selection (single branch or range of branches) to MPI. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5809 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 18 Jan, 2013 1 commit
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5752 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 15 Jan, 2013 1 commit
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5704 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 14 Jan, 2013 1 commit
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mvalle authored
Now ignore empty lines at the beginning of the msa Added routine to check the branches on the tree root. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5673 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 11 Jan, 2013 3 commits
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5669 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5660 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5659 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 21 Dec, 2012 1 commit
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5601 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 19 Dec, 2012 2 commits
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mvalle authored
Changed name to the internal variable mTimesFromFile to mBranchLengthFromFile. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5567 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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mvalle authored
git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5554 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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- 13 Dec, 2012 1 commit
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mvalle authored
Changed gene file to alignment file. git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@5470 95c5a404-1f88-0410-a6b0-c3f062b6f34a
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