Commits · 8ad6e7b5220a3e1e6c39824332f8fdd8ba561f4f · phylo / fastcodeml

11 Mar, 2016 13 commits
- Updating readme and todo files · 8ad6e7b5
  omid authored Mar 11, 2016
  
  8ad6e7b5
- removing non-useful command line options · 90e1b32e
  omid authored Mar 11, 2016
  
  90e1b32e
- some cosmetic changes · 9c808087
  omid authored Mar 11, 2016
  
  9c808087
- Fully correct final tree report · e146c29f
  omid authored Mar 11, 2016
  
  e146c29f
- corrected version for printing final tree · 888258e9
  omid authored Mar 11, 2016
  
  888258e9
- More changes on the final tree report · bf5c996a
  omid authored Mar 11, 2016
  
  bf5c996a
- some changes in command line option comments as well as final printed · 57979c06
  omid authored Mar 11, 2016
```
trees
```
  57979c06
- correct version (initial num of cores) · c0b2d7bb
  omid authored Mar 11, 2016
  
  c0b2d7bb
- initial num of threads (cont.) · 621fd2b5
  omid authored Mar 11, 2016
  
  621fd2b5
- more correction on initial num of threads · 25c70bf7
  omid authored Mar 11, 2016
  
  25c70bf7
- some changes in final timing reports and initial number of threads to · 26be0e27
  omid authored Mar 11, 2016
```
prevent possible false sharing
```
  26be0e27
- more final tree report corrections · 21a4d11a
  omid authored Mar 11, 2016
  
  21a4d11a
- Some correction in reporting the final tree (based on the chosen · d6205ef5
  omid authored Mar 11, 2016
```
hypothesis)
```
  d6205ef5
04 Mar, 2016 1 commit
- correcting a bug related to initializing (using command line parameters) · 78a52c80
  omid authored Mar 04, 2016
```
when branch lengths are not set to fixed 
```
  78a52c80
02 Mar, 2016 3 commits
- updating setpaths · 5223be55
  omid authored Mar 02, 2016
  
  5223be55
- Fortmatting fast.cpp created issues. reverting to the head version of · 113d641a
  omid authored Mar 02, 2016
```
master-eval. I am not confident with current formatting solution. 
```
  113d641a
- Some extra manual formatting of automated formatted code ! · 2d9f69bb
  omid authored Mar 02, 2016
  
  2d9f69bb
29 Feb, 2016 3 commits
- merging master-eval (finished) · 42e91b83
  omid authored Feb 29, 2016
  
  42e91b83
- merging master-eval up to WriteResults.h · 6377bc04
  omid authored Feb 29, 2016
  
  6377bc04
- merging master-eval up to CodeMLOptimizer.h · 4cc63271
  omid authored Feb 29, 2016
  
  4cc63271
03 Dec, 2015 11 commits
- remove nthreads message, thread number otputed twice · f00fdf26
  Iakov Davydov authored Dec 03, 2015
  
  f00fdf26
- fix nthreads output (correct indentations) · 60998f79
  Iakov Davydov authored Dec 03, 2015
  
  60998f79
- fix minor indented formatting · 4282844a
  Iakov Davydov authored Dec 03, 2015
  
  4282844a
- fix fastcodeml output (redo 7a445d17 ) · f6f1895e
  Iakov Davydov authored Dec 03, 2015
  
  f6f1895e
- fix multiple angular brackets and some comments formatting · a7c7aee6
  Iakov Davydov authored Dec 03, 2015
  
  a7c7aee6
- fix angular braces in the style file · 6db2cd70
  Iakov Davydov authored Dec 03, 2015
  
  6db2cd70
- apply formatting to 5e1e24c9 · d640fabf
  Iakov Davydov authored Dec 03, 2015
  
  d640fabf
- fix format.sh to not format nlopt.h · 14e81146
  Iakov Davydov authored Dec 03, 2015
  
  14e81146
- revert nlopt formatted badly · 18137892
  Iakov Davydov authored Dec 03, 2015
  
  18137892
- format all the code · 654e04d9
  Iakov Davydov authored Dec 03, 2015
  
  654e04d9
- code formatting scripts · e493e3f0
  Iakov Davydov authored Dec 03, 2015
  
  e493e3f0
02 Dec, 2015 1 commit
- fix formatting in simpleopt (broken in 2589ab and c3d6fe) · a2308fed
  Iakov Davydov authored Dec 02, 2015
  
  a2308fed
30 Oct, 2015 2 commits
- Merge branch 'master' of https://gitlab.isb-sib.ch/phylo/fastcodeml · 5784c17f
  Iakov Davydov authored Oct 30, 2015
  
  5784c17f
- remove extra tab in output for LnL0 · 58c37777
  Iakov Davydov authored Oct 30, 2015
  
  58c37777
29 Oct, 2015 1 commit
- clean.sh to clean after cmake · aa4952dd
  Iakov Davydov authored Oct 29, 2015
  
  aa4952dd
22 Jul, 2015 3 commits
- Merge branch 'master' of https://gitlab.isb-sib.ch/phylo/fastcodeml · 600a324a
  Sebastien Moretti authored Jul 22, 2015
  
  600a324a
- Exclude .git directory in tarball creation script · 83e309a2
  Sebastien Moretti authored Jul 22, 2015
  
  83e309a2
- fix fastcodeml output (may break BG/Q) · 7a445d17
  Iakov Davydov authored Jul 22, 2015
  
  7a445d17
21 Apr, 2015 1 commit
- Remove TODO done · c08a4777
  Sebastien Moretti authored Apr 21, 2015
  
  c08a4777
13 Apr, 2015 1 commit
- Add a TODO task: Need a CMakeLists.txt example with other compilers · 6996a28f
  Sebastien Moretti authored Apr 13, 2015
  
  6996a28f