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    • mvalle's avatar
      Added check for zero valid sites · 8ce34773
      mvalle authored
      Upgraded doxygen and fixed doxygen comments
      Fixed bug in write results
      Changed computation order. First H1 then H0
      Changed option init H1 from H0 to init H0 from H1
      Added maximization forced stop if result does not already pass the LRT
      Added MPI trace level and fixed messages
      Added testing hooks to BEB.
      Passed scale values from H1 to BEB
      Fixed relative error default
      Added initial map of internal to external site numbers
      Changed iterator initialization
      
      
      git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@4924 95c5a404-1f88-0410-a6b0-c3f062b6f34a
      8ce34773
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