1. 28 Jan, 2013 1 commit
  2. 24 Jan, 2013 1 commit
  3. 19 Dec, 2012 2 commits
  4. 13 Dec, 2012 1 commit
  5. 12 Dec, 2012 1 commit
  6. 18 Nov, 2012 2 commits
  7. 06 Nov, 2012 1 commit
  8. 29 Oct, 2012 1 commit
  9. 18 Oct, 2012 1 commit
    • mvalle's avatar
      Added check for zero valid sites · 8ce34773
      mvalle authored
      Upgraded doxygen and fixed doxygen comments
      Fixed bug in write results
      Changed computation order. First H1 then H0
      Changed option init H1 from H0 to init H0 from H1
      Added maximization forced stop if result does not already pass the LRT
      Added MPI trace level and fixed messages
      Added testing hooks to BEB.
      Passed scale values from H1 to BEB
      Fixed relative error default
      Added initial map of internal to external site numbers
      Changed iterator initialization
      
      
      git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@4924 95c5a404-1f88-0410-a6b0-c3f062b6f34a
      8ce34773
  10. 14 Oct, 2012 1 commit
  11. 12 Oct, 2012 1 commit
  12. 02 Oct, 2012 1 commit
  13. 24 Sep, 2012 1 commit
  14. 14 Sep, 2012 1 commit
  15. 23 Aug, 2012 2 commits
  16. 21 Aug, 2012 1 commit
  17. 03 Jul, 2012 1 commit
  18. 19 Jun, 2012 1 commit
  19. 11 Apr, 2012 1 commit
  20. 02 Apr, 2012 1 commit
  21. 28 Feb, 2012 1 commit
  22. 21 Feb, 2012 4 commits
  23. 03 Feb, 2012 1 commit
  24. 02 Feb, 2012 1 commit
  25. 11 Jan, 2012 1 commit
  26. 09 Jan, 2012 1 commit
  27. 23 Dec, 2011 1 commit
  28. 20 Dec, 2011 1 commit
  29. 16 Dec, 2011 1 commit
  30. 13 Dec, 2011 1 commit
  31. 15 Nov, 2011 1 commit
  32. 04 Nov, 2011 1 commit
    • mvalle's avatar
      More 'const' usage · 6a6ee9b7
      mvalle authored
      Use MKL VML functions
      Better log messages formatting
      Changed access method to children
      New implementation of the 'same tree' flag
      Fixed MKL directory and compilation line
      Removed alignment for PGI compiler
      Set slot (matrix and vector) length by experiment
      Removed inline keywords
      Added explicit to constructors
      Aligned eigen decomposed matrices
      Removed reversing of mD
      Using STL map to convert codons to numbers
      Reordered access to big vectors
      
      
      
      git-svn-id: https://svn.vital-it.ch/svn/hp2c/trunk/Codeml_Variants/Fastcodeml@2872 95c5a404-1f88-0410-a6b0-c3f062b6f34a
      6a6ee9b7
  33. 28 Oct, 2011 1 commit
  34. 18 Oct, 2011 1 commit