Commit 180a5da8 authored by Sebastien Moretti's avatar Sebastien Moretti
Browse files

Correct typos in webblast.pl help

parent 5e95af32
......@@ -54,7 +54,7 @@ if ( ($database_line || $database_var) && ($blast_line || $blast_var) ){
$locale = 1;
$database = 'expressopdb';
unless ( $quiet=~ /on/i ){
print {*STDERR} "\nRUN BLAST LOCALY\n";
print {*STDERR} "\nRUN BLAST LOCALLY\n";
}
}
else{
......@@ -63,7 +63,7 @@ if ( ($database_line || $database_var) && ($blast_line || $blast_var) ){
$locale = 1;
$blast_way = &CONTROLE_DB_PG($database, $blast_tp, $program);
unless ( $quiet=~ /on/i ){
print {*STDERR} "\nRUN BLAST LOCALY\n";
print {*STDERR} "\nRUN BLAST LOCALLY\n";
}
}
}
......@@ -74,7 +74,7 @@ else{
$locale = 2;
$distant = 0;
unless ( $quiet=~ /on/i ){
print {*STDERR} "\nRUN GIGABLASTER\n";
print {*STDERR} "\nRUN ON GIGABLASTER\n";
}
}
else{
......@@ -89,7 +89,7 @@ else{
if ( $method=~ /^pdbid$/i ){
if ( $gigablast=~ /^yes$/i ){
if ( $database ne 'pdb' ){
print {*STDERR} "\nprovide a valid database name to RUN GIGABLASTER: nr, pdb or refseq_protein\n";
print {*STDERR} "\nprovide a valid database name to RUN ON GIGABLASTER: nr, pdb or refseq_protein\n";
exit 1;
}
else {
......@@ -259,7 +259,7 @@ sub HELP {
-matrix ....... PAM30 PAM70 BLOSUM45 BLOSUM80
Default BLOSUM62
-method ....... geneid, pdbid, profile
-gigablast..... yes/no FASTER REMOTE BLAST with Gigablaster
-gigablast .... yes/no FASTER REMOTE BLAST with Gigablaster
(Stephane Audic program: http://www.igs.cnrs-mrs.fr/Giga2/~database/remoteblast.cgi)
Default no
-filter ....... T or F locally, L or R or M or C or V for distant blast
......@@ -273,14 +273,14 @@ sub HELP {
Default = 1
-processor .... Number of processors to use
Default = 1
-blast_dir .... Indicates where your BLAST directory is installed localy
-blast_dir .... Indicates where your BLAST directory is installed locally
-quiet ........ on : do not display all the default/defined blast parameters
Default off
Environement Variables
These variables can be set from the environement
DATABASE......................[Indicates where your database file must be fetched (localy)]
BLAST_DIRECTORY...............[Indicates where your BLAST directory is installed localy]
DATABASE......................[Indicates where your database file must be fetched (locally)]
BLAST_DIRECTORY...............[Indicates where your BLAST directory is installed locally]
";
exit 1;
......
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