Commit 4b92e082 authored by Sebastien Moretti's avatar Sebastien Moretti
Browse files

Update path for scratch and blastnet

parent 639dfb3a
......@@ -37,8 +37,8 @@ $ENV{'PATH'} .= ':/mnt/local/bin/'; # additional path for executable on the serv
my $Version = '3.4.4';
my $uct = 15; # UpdateCacheThreshold: number of days before update
my $cachedir = '/scratch/frt/tcoffee/ProtoGene_Cache'; # Cache directory
my $uct = 15; # UpdateCacheThreshold: number of days before update
my $cachedir = '/scratch/cluster/monthly/t_coffee/ProtoGene_Cache'; # Cache directory
##### User settings ####################################
my $userEMail = 'moretti.sebastien@gmail.com'; # To receive an e-mail with encountered problems; leave blank to inactive this option
my $webblast_exe = which('webblast.pl') || ''; #
......
......@@ -19,12 +19,12 @@ use warnings; ####### \ _ / #######
##############################################################################################
############################ EXPRESSO PARAM ##########################################################
my $database_expresso = 'pdb'; #PDB database name #
my $blast_dir_expresso = '/mnt/local/bin/blastall'; #blastall executable #
my $BLASTMAT = 'export BLASTMAT=/mnt/local/ncbi/data/'; #matrix directory for blast #
my $BLASTDB = 'export BLASTDB=/scratch/frt/blastnet/database/'; #PDB_seqres directoty #
########################################################################################################
############################ EXPRESSO PARAM #################################################
my $database_expresso = 'pdb'; #PDB database name #
my $blast_dir_expresso = '/mnt/local/bin/blastall'; #blastall executable #
my $BLASTMAT = 'export BLASTMAT=/mnt/local/ncbi/data/'; #matrix directory for blast #
my $BLASTDB = 'export BLASTDB=/db/blastnet/database/'; #PDB_seqres directoty #
###############################################################################################
my $runblast = '/mnt/local/bin/runblast.pl';
......
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