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Sebastien Moretti
ProtoGene
Commits
bc886e83
Commit
bc886e83
authored
Feb 05, 2015
by
Sebastien Moretti
Browse files
Add taxonomic exceptions
parent
f6a3e51a
Changes
1
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Side-by-side
Views0.pm
View file @
bc886e83
...
...
@@ -196,6 +196,7 @@ my %longer_species_name = ( 'altaica' => '', #Panthera tigris altaica
'
alvus
'
=>
'',
#Candidatus Methanomethylophilus alvus
'
andium
'
=>
'',
#Anas flavirostris andium
'
birmanicus
'
=>
'',
#Bos javanicus birmanicus
'
bison
'
=>
'',
#Bison bison bison
'
boliviensis
'
=>
'',
#Saimiri boliviensis boliviensis
'
brucei
'
=>
'',
#Trypanosoma brucei brucei
'
corporis
'
=>
'',
#Pediculus humanus corporis
...
...
@@ -274,7 +275,7 @@ sub Html {
my
$pred
=
'';
my
@desc
=
split
('
',
$match
);
# TPA is Third Party Annotation; TPA; TPA:REASSEMBLY.
if
(
$desc
[
0
]
=~
/PREDICTED:?/
||
$desc
[
0
]
eq
/Synthetic/
||
$desc
[
0
]
eq
/Uncultured/i
||
$desc
[
0
]
=~
/TSA:?/
||
$desc
[
0
]
=~
/TPA:?/
||
$desc
[
0
]
=~
/TPA_inf:?/
){
if
(
$desc
[
0
]
=~
/PREDICTED:?/
||
$desc
[
0
]
eq
/Synthetic/
||
$desc
[
0
]
eq
/Uncultured/i
||
$desc
[
0
]
=~
/TSA:?/
||
$desc
[
0
]
=~
/TPA:?/
||
$desc
[
0
]
=~
/TPA_inf:?/
||
$desc
[
0
]
=~
/UNVERIFIED:?/
){
$pred
=
$
1
.
'
';
shift
(
@desc
);
}
...
...
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