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Sebastien Moretti
ProtoGene
Commits
e0687a1f
Commit
e0687a1f
authored
Jul 17, 2019
by
Sebastien Moretti
Browse files
Change cache path
parent
52fadf50
Changes
1
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ProtoGene.pl
View file @
e0687a1f
...
...
@@ -28,13 +28,13 @@ use Views; # Non-text outputs, e.g. HTML/CSS
################## CONFIGURATION ##################
my
$cachePath
=
'
/scratch/
beegfs/monthly/tcoffee
/ProtoGene_Cache
';
# Cache directory
my
$cacheStorageTime
=
15
;
# Do not update sequences younger than X days
my
$cachePath
=
'
/scratch/
cabernet/monthly
/ProtoGene_Cache
';
# Cache directory
my
$cacheStorageTime
=
15
;
# Do not update sequences younger than X days
my
$eutilsEmail
=
quotemeta
('
tcoffee@vital-it.ch
');
# Put your e-mail for NCBI eutils requests
my
$eutilsEmail
=
quotemeta
('
tcoffee@vital-it.ch
');
# Put your e-mail for NCBI eutils requests
my
$eutilsTool
=
'
ProtoGene
';
my
$eutilsAPIKey
=
'
2fc650885ef3f15ca562083e6332e7103c08
';
my
$userEMail
=
'
moretti.sebastien@gmail.com
';
# To receive e-mails with encountered problems; leave blank to inactive
my
$userEMail
=
'
moretti.sebastien@gmail.com
';
# To receive e-mails with encountered problems; leave blank to inactive
### BLAST parameters ###
my
$blast_param
=
{
'
evalue
'
=>
0.05
,
...
...
@@ -64,7 +64,7 @@ my $exonerate_exe = 'exonerate'; # Exonerate 1.0 because current parser on
################## Option management
my
(
$msa
,
$revtrans
,
$pep
,
$hideBOJ
,
$run_name
,
$template
,
$lim
)
=
('',
0
,
0
,
0
,
'',
'',
0
);
my
(
$cache
,
$cleancache
)
=
('
update
',
'
update
');
#TODO Finish to implement
my
(
$cache
,
$cleancache
)
=
('
update
',
'
update
');
#TODO Finish to implement
my
(
$debug
,
$tmp
)
=
(
0
,
0
);
my
(
$db
,
$species
,
$local
,
$giga
)
=
(
$blast_param
->
{'
db1
'},
$blast_param
->
{'
species
'},
0
,
0
);
my
%opts
=
('
msa|in=s
'
=>
\
$msa
,
# Input sequences
...
...
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