Commit ecb9cedd authored by Sebastien Moretti's avatar Sebastien Moretti
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parent 03afdfc8
...@@ -55,7 +55,7 @@ my $blast_param = { 'evalue' => 0.05, ...@@ -55,7 +55,7 @@ my $blast_param = { 'evalue' => 0.05,
################################################### ###################################################
my $VERSION = '4.1.0'; my $VERSION = '4.2.0';
my $webblast_exe = '/mnt/common/share/ProtoGene/webblast.pl'; my $webblast_exe = '/mnt/common/share/ProtoGene/webblast.pl';
my $blast_exe = 'blastall'; # Or wu-blastall for Wu-BLAST; for local blast usage my $blast_exe = 'blastall'; # Or wu-blastall for Wu-BLAST; for local blast usage
...@@ -125,6 +125,9 @@ if ( !$test_option_values || ($msa eq '' && $cache ne 'empty' && $cache ne 'old' ...@@ -125,6 +125,9 @@ if ( !$test_option_values || ($msa eq '' && $cache ne 'empty' && $cache ne 'old'
################## Check cache directory accessibility ################## Check cache directory accessibility
if ( -d $cache ){
$cachePath = $cache;
}
checkCacheAccessibility($cachePath); checkCacheAccessibility($cachePath);
# Cache management # Cache management
...@@ -554,9 +557,9 @@ PROTOGENE re-builds the original alignment with nucleotidic information it has g ...@@ -554,9 +557,9 @@ PROTOGENE re-builds the original alignment with nucleotidic information it has g
=over 8 =over 8
=item version 4.1.0 =item version 4.2.0
=item on Mar 15th, 2012 =item on Aug 08th, 2013
=back =back
......
# #
#Version: 4.0.7 #Version: 4.2.0
#OS: Linux #OS: Linux
#Author: Sebastien Moretti #Author: Sebastien Moretti
#E-mail: moretti.sebastien [AT] gmail.com #E-mail: moretti.sebastien [AT] gmail.com
# #
History of ProtoGene improvements: 4.2.0
Switch to exonerate 2.2.0
4.0.7 4.0.7
Harmonize download methods Harmonize download methods
Deep cleaning of code and names Deep cleaning of code and names
......
...@@ -9,6 +9,7 @@ ...@@ -9,6 +9,7 @@
use LWP::UserAgent; use LWP::UserAgent;
use HTTP::Request::Common qw(POST); use HTTP::Request::Common qw(POST);
use Getopt::Long; use Getopt::Long;
use URI::Escape;
use strict; use strict;
use warnings; use warnings;
############################################################################################## ##############################################################################################
......
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