Commits · e0687a1fe49172eca8d2f195ffa31175cd35ecda · Sebastien Moretti / ProtoGene

17 Jul, 2019 1 commit
- Change cache path · e0687a1f
  Sebastien Moretti authored Jul 17, 2019
  
  e0687a1f
01 Jun, 2018 1 commit
- Since centos7 update --exhaustive option looks to turn into an infinite loop · d7f22081
  Sebastien Moretti authored Jun 01, 2018
  
  d7f22081
07 Dec, 2017 1 commit
- Use new NCBI eutilsAPIKey · 25da5587
  Sebastien Moretti authored Dec 07, 2017
  
  25da5587
20 Sep, 2016 1 commit
- Use FindBin · 5c7d5386
  Sebastien Moretti authored Sep 20, 2016
  
  5c7d5386
09 Sep, 2016 2 commits
- Better rendering for ncbi acc.version id + Better stdout rendering + Update... · 69d48150
  Sebastien Moretti authored Sep 09, 2016
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Better rendering for ncbi acc.version id + Better stdout rendering + Update ncbi prot/nt links + Fix revtrans for the tcoffee server
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  69d48150
- Start to use new NCBI GI format + eutils https + Start new cache mecanism + Cleaning · 1151b3f3
  Sebastien Moretti authored Sep 09, 2016
  
  1151b3f3
22 Oct, 2014 1 commit
- Version compliant with ProtoGene RPM 4.2.0 and its manually edited files in /software · f6a3e51a
  Sebastien Moretti authored Oct 22, 2014
  
  f6a3e51a
26 May, 2014 1 commit
- Remove OLD blast URL + OLD wu-blast · 9f58015a
  Sebastien Moretti authored May 26, 2014
  
  9f58015a
20 Dec, 2013 1 commit
- Update doc for new cache mgmt · ff3e6b2f
  Sebastien Moretti authored Dec 20, 2013
  
  ff3e6b2f
28 Nov, 2013 1 commit
- Allow revtrans to be a boolean or a string option (for tcoffee web server) · 7a874457
  Sebastien Moretti authored Nov 28, 2013
  
  7a874457
14 Aug, 2013 1 commit
- Fix to display right name for genomic seq with from-to · 9971b045
  Sebastien Moretti authored Aug 14, 2013
  
  9971b045
09 Aug, 2013 2 commits
- Fix for exonerate 2.2.0 that looks to have problems with target filename containing : · 2af3aba0
  Sebastien Moretti authored Aug 09, 2013
  
  2af3aba0
- Fix for exonerate 2.2.0 that looks to have problems with target filename containing : · be1675be
  Sebastien Moretti authored Aug 09, 2013
  
  be1675be
08 Aug, 2013 3 commits
- No commit message · 681183a1
  Sebastien Moretti authored Aug 08, 2013
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  681183a1
- If * is in the original sequence no need to switch --- · 3de29348
  Sebastien Moretti authored Aug 08, 2013
  
  3de29348
- No commit message · ecb9cedd
  Sebastien Moretti authored Aug 08, 2013
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  ecb9cedd
31 Jul, 2013 2 commits
- Set new paths, compatible with module · f9ef540d
  Sebastien Moretti authored Jul 31, 2013
  
  f9ef540d
- Add parsing elements to deal with exonerate 2.2.0 changes · bf3e5e97
  Sebastien Moretti authored Jul 31, 2013
  
  bf3e5e97
26 Jul, 2013 1 commit
- Cleaning + remove unused modules · e1edc701
  Sebastien Moretti authored Jul 26, 2013
  
  e1edc701
27 Jun, 2013 1 commit
- No commit message · 919560fe
  Sebastien Moretti authored Jun 27, 2013
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  919560fe
29 Nov, 2012 1 commit
- Print NCBI prob also in STDOUT now · a8c7db2a
  Sebastien Moretti authored Nov 29, 2012
  
  a8c7db2a
05 Jul, 2012 1 commit
- No commit message · 5e4e8e17
  Sebastien Moretti authored Jul 05, 2012
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  5e4e8e17
15 Mar, 2012 2 commits
- No commit message · 4eef4a91
  Sebastien Moretti authored Mar 15, 2012
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  4eef4a91
- Fix when all blast hits fail to be aligned + clean debug prints · fbded075
  Sebastien Moretti authored Mar 15, 2012
  
  fbded075
09 Mar, 2012 1 commit

Big bug fixes: remove useless LOG file + proper e-mail address for eutils +... · 1e1122f7

Sebastien Moretti authored Mar 09, 2012

Big bug fixes: remove useless LOG file + proper e-mail address for eutils + Allow download of entries with only fasta header and no sequence associated + date fixing + correct wrong loop id + better checkExternalSoftware fct

1e1122f7

13 Aug, 2011 2 commits
- Version and requirements updates · f8fa4179
  Sebastien Moretti authored Aug 13, 2011
  
  f8fa4179
- Remove useless argument for create BOJ output fct · 005e305d
  Sebastien Moretti authored Aug 13, 2011
  
  005e305d
07 Aug, 2011 2 commits
- Optimize part of the code · c19a8320
  Sebastien Moretti authored Aug 07, 2011
  
  c19a8320
- Clean code + simplify code + add new RefSeq genomic id beginning · 164fa2dd
  Sebastien Moretti authored Aug 07, 2011
  
  164fa2dd
01 Aug, 2011 1 commit
- Fix fatal error when using undefined hash ref in testBOJ fct · 9b4020bc
  Sebastien Moretti authored Aug 01, 2011
  
  9b4020bc
30 Jul, 2011 2 commits
- Crash prob · 022bcba2
  Sebastien Moretti authored Jul 30, 2011
  
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- Other cleaning stuffs in main script · a491ae22
  Sebastien Moretti authored Jul 30, 2011
  
  a491ae22
02 Jul, 2011 2 commits
- Cleaning · 264a0ab4
  Sebastien Moretti authored Jul 02, 2011
  
  264a0ab4
- Cleaning · 7e8b670c
  Sebastien Moretti authored Jul 02, 2011
  
  7e8b670c
16 Jun, 2011 1 commit
- New Gigablaster URL · b12feebd
  Sebastien Moretti authored Jun 16, 2011
  
  b12feebd
29 May, 2011 5 commits
- Simplify runExonerate · 4a7840c8
  Sebastien Moretti authored May 29, 2011
  
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- Use more references to deal with hash going from fct to fct · 91221674
  Sebastien Moretti authored May 29, 2011
  
  91221674
- No commit message · 271bc8db
  Sebastien Moretti authored May 29, 2011
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  271bc8db
- Lots of cleaning · 6606ade4
  Sebastien Moretti authored May 29, 2011
  
  6606ade4
- No commit message · 0c7f1145
  Sebastien Moretti authored May 29, 2011
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  0c7f1145