Skip to content
Snippets Groups Projects
Select Git revision
  • develop
  • master default protected
  • PBdocfixes
  • rce
  • docker
  • harmopt
  • X-SEGV
  • asTbl
  • wFF
  • nnxpl
  • zotf
  • toolsdoc
  • help
  • trap
  • fix-sort
  • sepckfn
  • systest
  • noshell
  • notfound
  • sutd
  • ugperl
  • v1.5.5
22 results

build.sh

Blame
    • build.sh 682 B
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
    11
    12
    13
    14
    15
    16
    17
    18
    19
    20
    21
    22
    23
    24 
    

    

    

    #!/bin/sh
set -x -e

# programs installed
# chipcor chipextract chipcenter chippeak chippart chipscore bed2bed_display bed2sga compactsga countsga featreplace filter_counts sga2bed sga2wig
# check_bed.pl chr_replace_sga.pl eland2sga.pl fetch_sga.pl fps2sga.pl gff2sga.pl partit2bed.pl partit2gff.pl partit2sga.pl sga2fps.pl sga2gff.pl sga2wigSmooth_FS.pl


# Fix math round compilation issue
sed -i 's@\((LDFLAGS).*\)@\1 -lm@' tools/Makefile
export DESTDIR="${PREFIX}/"
make clean
make progs
cd tools/
make
cd ..
make install
#Fix Perl bang path
sed -i 's@#!.*perl@#!/usr/bin/env perl@' tools/*.pl
install tools/*.pl $DESTDIR/bin/
make install-man
make install-dat
make install-doc