Commits · master · EPD / chipseq · GitLab

Feb 07, 2025
- propagated typo fix to exp file, which is _also_ checked when checking for failure! · 492d27af
  Thomas Junier authored 8 months ago
  
  492d27af
- More fixes to UG · 875ab1a8
  Thomas Junier authored 8 months ago
  
  875ab1a8
- Update to version PB250206 · 670d3512
  Sebastien Moretti authored 8 months ago
  
  670d3512
Jan 31, 2025
- clearled all TODOs/FIXMEs that I can resolve without further input from PB · b0eef88d
  Thomas Junier authored 8 months ago
  
  b0eef88d
- fixed typo in help to partit2gff.pl; added help (as table, like other progs)... · 1b4f6e6f
  Thomas Junier authored 8 months ago
  1b4f6e6f
- non-zero is correct, according to SGA files in ./data · 37918812
  Thomas Junier authored 8 months ago
  
  37918812
- The "Docker problem" has been solved (it was actually a permission problem due... · 30fdfe1f
  Thomas Junier authored 8 months ago
  30fdfe1f
- Thie purpose of the UG is not to provide help about Docker :-) · ec114e11
  Thomas Junier authored 8 months ago
  
  ec114e11
- target path must indeed be absolute; which it already is in the current... · 6c3c2f4a
  Thomas Junier authored 8 months ago
  6c3c2f4a
- Added linking sentence between description of _chro_idx.nstorage_ and cmd that exemplifies it suse · da90ff7c
  Thomas Junier authored 8 months ago
  
  da90ff7c
- seq name and ID fields now allow 64 chars (prviously 18) · 9f0f413c
  Thomas Junier authored 8 months ago
  
  9f0f413c
- fixed field index (11 -> 10) in cut cmd · dfefc98b
  Thomas Junier authored 8 months ago
  
  dfefc98b
- Merge branch 'master' of file:///home/tjunier/depot/chipseq · 1db23876
  Thomas Junier authored 8 months ago
  
  1db23876
- correct Wget URL & other fixes · 215a108d
  Thomas Junier authored 8 months ago
  
  215a108d
Jan 30, 2025
- Add missing root makefile gunzip-data rule for install-data · 3a799e59
  Sébastien Moretti authored 8 months ago
  
  3a799e59
- Fix duplicated DATA entry · 9b1e5408
  Sébastien Moretti authored 8 months ago
  
  9b1e5408
Jan 24, 2025
- fixed 1 instance of "server", (PB, 2025-01-24 TC) · e463096d
  Thomas Junier authored 8 months ago
  
  e463096d
- rewording · 8720da15
  Thomas Junier authored 8 months ago
  
  8720da15
Jan 23, 2025
- typo · 07b1cead
  Thomas Junier authored 8 months ago
  
  07b1cead
- The "permission problem" only occurred in gocryptfs-encrypted directories such... · 259ee310
  Thomas Junier authored 8 months ago
  259ee310
- The length limits were not originally mentioned, so I will leave it at that · 56285fc3
  Thomas Junier authored 8 months ago
  
  56285fc3
- added "doc" tgt to "all", so that `$ make` builds it too. · 170a82a2
  Thomas Junier authored 8 months ago
  
  170a82a2
- In th end, we still regularly do 'make gunzip-data', so I'll keep it in · 01a20716
  Thomas Junier authored 8 months ago
  01a20716
- metacomments · dceede61
  Thomas Junier authored 8 months ago
  
  dceede61
Jan 16, 2025
- spurious asterisk removed · 107e4b8a
  Thomas Junier authored 8 months ago
  
  107e4b8a
- fixed typography and spelling · 5502d92d
  Thomas Junier authored 8 months ago
  
  5502d92d
- rm spurious TODO · d52db311
  Thomas Junier authored 8 months ago
  
  d52db311
- Integrated additional info for sga2bed and sga2wig (PB's mail from 2024-11-21) · 69d48fb5
  Thomas Junier authored 10 months ago
  
  69d48fb5
- fixed conflicts · ba3fdabf
  Thomas Junier authored 8 months ago
  
  ba3fdabf
- Went through all comments I had annotated on the UG printout. · 506e6c6d
  Thomas Junier authored 11 months ago
  506e6c6d
- Remaining program names in italics, except in code · 656efb69
  Thomas Junier authored 11 months ago
  
  656efb69
- +- -> Appendix A · db58f2c5
  Thomas Junier authored 11 months ago
  
  db58f2c5
- typos · f3d80fcb
  Thomas Junier authored 11 months ago
  
  f3d80fcb
- s/def./default:/ <- no reason not to spell it out · 81ee9a37
  Thomas Junier authored 11 months ago
  
  81ee9a37
- updated UG (PDF) · 54d594b7
  Thomas Junier authored 11 months ago
  
  54d594b7
- s/def:/default:/ <- no reason not to spell it out · a4752838
  Thomas Junier authored 11 months ago
  
  a4752838
- s/ Chrom Id Storable File/ genome information file/ · 33be6ca8
  Thomas Junier authored 11 months ago
  
  33be6ca8
- s/SIB/EPD/g · 72640882
  Thomas Junier authored 11 months ago
  
  72640882
- Another pass at folding all *.pl into italics, except in code · 5d051f95
  Thomas Junier authored 11 months ago
  
  5d051f95
- Another pass at folding all chip* into italics, except in code · 26f762d1
  Thomas Junier authored 11 months ago
  
  26f762d1