Fix paths in docserv.conf

etc/docserv.conf

@@ -20,13 +20,13 @@ text::sp "fetch sp:$entry" text/plain
 fasta::sp "fetch -f sp:$entry" text/plain
 text::trest "fetch trest:$entry" text/plain
 fasta::trest "fetch -f trest:$entry" text/plain
-html::trest "/usr/molbio/perl/trestTXT2HTML.pl $entry" text/html
+html::trest "../cgi-bin/trestTXT2HTML.pl $entry" text/html
 text::trgen "fetch trgen:$entry" text/plain
 fasta::trgen "fetch -f trgen:$entry" text/plain
-html::trgen "/usr/molbio/perl/trestTXT2HTML.pl $entry" text/html
+html::trgen "../cgi-bin/trestTXT2HTML.pl $entry" text/html
 text::ug_contig "fetch ug_contig:$entry" text/plain
 raw::trace "get_trace $entry"
-html::transfac "/home/local/epd/cgi-bin/TFTXT2HTML.pl $entry" text/html
+html::transfac "../cgi-bin/TFTXT2HTML.pl $entry" text/html
 tview::trace "view_trace $entry" text/html
 text::qdoc "fetch doc:$entry" text/plain
 text::prf "fetch pstprf:$entry" text/plain
@@ -40,56 +40,56 @@ text::rh "fetch rh:$entry" text/plain
 text::repbase "fetch repbase:$entry" text/plain
 text::gp "fetch gp:$entry" text/plain
 text::pir "fetch pir:$entry" text/plain
-text::epd "fetch -c /home/local/ccg/etc/fetch.conf epd:$entry" text/plain
-html::epd "/home/local/epd/cgi-bin/epdTxt2HTML.pl $entry" text/html
-nice::epd "/home/local/epd/cgi-bin/EPD2NICE.pl $entry" text/html
-text::epdseq "fetch -c /home/local/ccg/etc/fetch.conf epdseq:$entry" text/plain
-genome::epdNew_hg18 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::epdNew_hg "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::epdNew_dm "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::epdNew_dr "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::epdNew_mm9 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::epdNew_mm "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::ensembl_hg18 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::ensembl_mm9 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::ensembl_dm "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
-genome::hgEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::hsNCEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::hgEpdNewTest "php -e /home/local/epd/htdocs/epdNew2genomeTest.php $db $entry" text/html
-genome::hgEpdNew2 "php -e /home/local/epd/htdocs/epdNew2genome2.php $db $entry" text/html
-genome::dmEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::drEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::mmEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::mmNCEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::ceEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::atEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::scEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::spEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::zmEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::amEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::ggEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::rnEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::cfEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::rmEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-genome::pfEpdNew "php -e /home/local/epd/htdocs/epdNew2genome.php $db $entry" text/html
-text::cleanex "fetch -c /home/local/ccg/etc/fetch.conf cleanex:$entry" text/plain
-html::cleanex "/home/local/ccguser/cleanex_http/cgi-bin/cleanexTxt2HTML.pl $entry" text/html
-nice::cleanex "/home/local/ccguser/cleanex_http/cgi-bin/cleanex2NICE.pl $entry" text/html
-full::cleanex "/home/local/ccguser/cleanex_http/cgi-bin/cleanex2FULL.pl $entry" text/html
+text::epd "fetch -c ./fetch.conf epd:$entry" text/plain
+html::epd "../cgi-bin/epdTxt2HTML.pl $entry" text/html
+nice::epd "../cgi-bin/EPD2NICE.pl $entry" text/html
+text::epdseq "fetch -c ./fetch.conf epdseq:$entry" text/plain
+#genome::epdNew_hg18 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::epdNew_hg "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::epdNew_dm "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::epdNew_dr "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::epdNew_mm9 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::epdNew_mm "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::ensembl_hg18 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::ensembl_mm9 "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+#genome::ensembl_dm "/home/local/epd/cgi-bin/epdNew2genome.pl $db $entry" text/html
+genome::hgEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::hsNCEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+#genome::hgEpdNewTest "php -e /home/local/epd/htdocs/epdNew2genomeTest.php $db $entry" text/html
+genome::hgEpdNew2 "php -e ../htdocs/epdNew2genome2.php $db $entry" text/html
+genome::dmEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::drEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::mmEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::mmNCEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::ceEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::atEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::scEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::spEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::zmEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::amEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::ggEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::rnEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::cfEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::rmEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+genome::pfEpdNew "php -e ../htdocs/epdNew2genome.php $db $entry" text/html
+text::cleanex "fetch -c ./fetch.conf cleanex:$entry" text/plain
+##html::cleanex "/home/local/ccguser/cleanex_http/cgi-bin/cleanexTxt2HTML.pl $entry" text/html
+##nice::cleanex "/home/local/ccguser/cleanex_http/cgi-bin/cleanex2NICE.pl $entry" text/html
+##full::cleanex "/home/local/ccguser/cleanex_http/cgi-bin/cleanex2FULL.pl $entry" text/html
 text::epdex "fetch epdex:$entry" text/plain
-html::epdex "/home/local/epd/cgi-bin/epdexTxt2HTML.pl $entry" text/html
-nice::epdex "/home/local/epd/cgi-bin/epdex2NICE.pl $entry" text/html
-text::cleanex_ref "/home/local/ccguser/cleanex_http/cgi-bin/cleanex_text_dispatcher.pl $entry text" text/plain
-html::cleanex_ref "/home/local/ccguser/cleanex_http/cgi-bin/cleanex_dispatcher.pl $entry" text/html
-nice::cleanex_ref "/home/local/ccguser/cleanex_http/cgi-bin/REF2NICE.pl $entry" text/html
-html::cleanex_trg "/home/local/ccguser/cleanex_http/cgi-bin/TRG2HTML.pl $entry" text/html
-text::cleanex_trg "fetch -c fetch.conf cleanex_trg:$entry" text/plain
-nice::cleanex_trg "/home/local/ccguser/cleanex_http/cgi-bin/TRG2NICE.pl $entry" text/html
-html::lib "/export/mirror/cleanex/cgi-bin/make_lib_list.pl $entry" text/html
-fasta::kn "/usr/molbio/share/perl/fetch -c /home/httpd/htdocs/pharma/fetch.conf kn:$entry" text/plain
-fasta::kn2 "/usr/molbio/share/perl/fetch -c /home/httpd/htdocs/pharma/fetch.conf kn2:$entry" text/plain
-fasta::kn3 "/usr/molbio/share/perl/fetch -c /home/httpd/htdocs/pharma/fetch.conf kn3:$entry" text/plain
-fasta::nan "/usr/molbio/share/perl/fetch -c /home/httpd/htdocs/pancreas/localfetch.conf nan:$entry" text/plain
+html::epdex "../cgi-bin/epdexTxt2HTML.pl $entry" text/html
+#nice::epdex "/home/local/epd/cgi-bin/epdex2NICE.pl $entry" text/html
+##text::cleanex_ref "/home/local/ccguser/cleanex_http/cgi-bin/cleanex_text_dispatcher.pl $entry text" text/plain
+##html::cleanex_ref "/home/local/ccguser/cleanex_http/cgi-bin/cleanex_dispatcher.pl $entry" text/html
+##nice::cleanex_ref "/home/local/ccguser/cleanex_http/cgi-bin/REF2NICE.pl $entry" text/html
+##html::cleanex_trg "/home/local/ccguser/cleanex_http/cgi-bin/TRG2HTML.pl $entry" text/html
+text::cleanex_trg "fetch -c ./fetch.conf cleanex_trg:$entry" text/plain
+##nice::cleanex_trg "/home/local/ccguser/cleanex_http/cgi-bin/TRG2NICE.pl $entry" text/html
+##html::lib "/export/mirror/cleanex/cgi-bin/make_lib_list.pl $entry" text/html
+fasta::kn "fetch -c ./fetch.conf kn:$entry" text/plain
+fasta::kn2 "fetch -c ./fetch.conf kn2:$entry" text/plain
+fasta::kn3 "fetch -c ./fetch.conf kn3:$entry" text/plain
+#fasta::nan "fetch -c /home/httpd/htdocs/pancreas/localfetch.conf nan:$entry" text/plain
 fasta::incyte "fetch -f incyte:$entry" text/plain
 fasta::athpep "fetch -f athpep:$entry" text/plain
 fasta::athcds "fetch -f athcds:$entry" text/plain
@@ -97,10 +97,10 @@ fasta::athseq "fetch -f athseq:$entry" text/plain
 fasta::crepep "fetch -f crepep:$entry" text/plain
 fasta::credna "fetch -f credna:$entry" text/plain
 fasta::ipi "fetch ipi:$entry" text/plain
-text::hits "fetch -c /db/pff/fetch.conf $entry" text/plain
+text::hits "fetch -c ./fetch.conf $entry" text/plain
 fasta::trome "fetch to:$entry" text/plain
 text::tromer "fetch tromer:$entry" text/plain
-text::map "fetch -c /home/local/ccg/etc/fetch.conf map:$entry" text/plain
+text::map "fetch -c ./fetch.conf map:$entry" text/plain
 text::trome_hg18 "fetch -c /home/local/db/trome/hg18/tromer/fetch.conf ug:$entry" text/plain
 text::trome_hg19 "fetch -c /home/local/db/trome/hg19/tromer/fetch.conf ug:$entry" text/plain
 text::trome_hg38 "fetch -c /home/local/db/trome/hg38/tromer/fetch.conf ug:$entry" text/plain
@@ -109,6 +109,6 @@ text::trome_mm9 "fetch -c /home/local/db/trome/mm9/tromer/fetch.conf ug:$entry"
 text::trome_ce4 "fetch -c /home/local/db/trome/ce4/tromer/fetch.conf ug:$entry" text/plain
 text::trome_dm3 "fetch -c /home/local/db/trome/dm3/tromer/fetch.conf ug:$entry" text/plain
 text::trome_rn3 "fetch -c /home/local/db/trome/rn3/tromer/fetch.conf ug:$entry" text/plain
-fasta::trome_mm "/usr/molbio/share/perl/fetch -c /db/trome/mus/tromer/fetch.conf rna:$entry" text/html
+fasta::trome_mm "fetch -c /db/trome/mus/tromer/fetch.conf rna:$entry" text/html
 #text::map "fetch -c /db/trome/tromer/fetch.conf ug:$entry" text/plain