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Commit b524941b authored by Sebastien Moretti's avatar Sebastien Moretti
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Update (bio)schema metadata

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htdocs/epdnew/gif/.gitignore 0 → 100644
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<script type="application/ld+json">
{
"@context": "http://schema.org",
"@id": "https://epd.expasy.org/epd/",
"@type": "DataCatalog",
"description": "The Eukaryotic Promoter Database (EPD) is a set of species-specific databases of experimentally validated promoters.",
"description": "The Eukaryotic Promoter Database (EPD) is a set of species-specific databases of experimentally validated promoters",
"keywords": "next-generation sequencing, genome annotation, promoter",
"name": "EPD - Eukaryotic Promoter Database",
"name": "EPDnew - Eukaryotic Promoter Database",
"provider": [
{
"@id": "https://www.sib.swiss/",
"@type": "Organization",
"name": "SIB Swiss Institute of Bioinformatics"
"name": "SIB Swiss Institute of Bioinformatics",
"sameAs": "https://ror.org/002n09z45"
}
],
"url": "https://epd.expasy.org/epd/",
"isAccessibleForFree" : true,
"license": {
"@type": "CreativeWork",
"name": "Attribution 4.0 International (CC BY 4.0)",
"url": "https://creativecommons.org/licenses/by/4.0/"
},
"citation": [
{
"@id": "https://doi.org/10.1093/nar/gks1233",
"@id": "https://doi.org/10.1093/nar/gkz1014",
"@type": "ScholarlyArticle",
"headline": "EPD in 2020: enhanced data visualization and extension to ncRNA promoters",
"author": [
{"@type": "Person", "givenName": "Patrick", "familyName": "Meylan", "identifier": "https://orcid.org/0000-0001-8244-7065"},
{"@type": "Person", "givenName": "René", "familyName": "Dreos", "identifier": "https://orcid.org/0000-0002-0816-7775"},
{"@type": "Person", "givenName": "Giovanna", "familyName": "Ambrosini", "identifier": "https://orcid.org/0000-0003-1294-6541"},
{"@type": "Person", "givenName": "Romain", "familyName": "Groux", "identifier": "https://orcid.org/0000-0001-9907-7451"},
{"@type": "Person", "givenName": "Philipp", "familyName": "Bucher", "identifier": "https://orcid.org/0000-0003-4824-885X"}
],
"datePublished": "2019-11-04"
}
],
"hasPart" : [
{
"@type": "Dataset",
"name": "H. sapiens",
"description": "hsEPDnew, the Homo sapiens (human) curated promoter database.",
"url": "https://epd.expasy.org/epd/human/human_database.php?db=human",
"isAccessibleForFree" : true,
"isBasedOn": [
{
"@type": "CreativeWork",
"name": "Riken/ENCODE CAGE data downloaded from UCSC."
},
{
"@type": "CreativeWork",
"name": "FANTOM5 data."
},
{
"@type": "CreativeWork",
"name": "Rampage data."
},
{
"@type": "CreativeWork",
"name": "EPD."
}
],
"license": {
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"name": "Attribution 4.0 International (CC BY 4.0)",
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},
"provider": {
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"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "H. sapiens non-coding",
"description": "hsEPDnewNC, the Homo sapiens (human) curated non-coding promoter database.",
"url": "https://epd.expasy.org/epd/human_nc/human_nc_database.php?db=human_nc",
"isAccessibleForFree" : true,
"license": {
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"name": "Attribution 4.0 International (CC BY 4.0)",
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"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "M. mulatta",
"description": "rmEPDnew, the Macaca mulatta (rhesus macaque) curated promoter database.",
"url": "https://epd.expasy.org/epd/M_mulatta/M_mulatta_database.php?db=M_mulatta",
"isAccessibleForFree" : true,
"license": {
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"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "M. musculus",
"description": "mmEPDnew, the Mus musculus (mouse) curated promoter database.",
"url": "https://epd.expasy.org/epd/mouse/mouse_database.php?db=mouse",
"isAccessibleForFree" : true,
"license": {
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}
},
{
"@type": "Dataset",
"name": "M. musculus non-coding",
"description": "mmEPDnewNC, the Mus musculus (mouse) curated non-coding promoter database.",
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"isAccessibleForFree" : true,
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}
},
{
"@type": "Dataset",
"name": "R. norvegicus",
"description": "rnEPDnew, the Rattus Norvegicus (rat) curated promoter database.",
"url": "https://epd.expasy.org/epd/R_norvegicus/R_norvegicus_database.php?db=R_norvegicus",
"isAccessibleForFree" : true,
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}
},
{
"@type": "Dataset",
"name": "C. familiaris",
"description": "cfEPDnew, the Canis familiaris (dog) curated promoter database.",
"url": "https://epd.expasy.org/epd/C_familiaris/C_familiaris_database.php?db=C_familiaris",
"isAccessibleForFree" : true,
"license": {
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"provider": {
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"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "G. gallus",
"description": "ggEPDnew, the Gallus gallus (chicken) curated promoter database.",
"url": "https://epd.expasy.org/epd/G_gallus/G_gallus_database.php?db=G_gallus",
"isAccessibleForFree" : true,
"license": {
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"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "D. melanogaster",
"description": "dmEPDnew, the Drosophila melanogaster (fruit fly) curated promoter database.",
"url": "https://epd.expasy.org/epd/drosophila/drosophila_database.php?db=drosophila",
"isAccessibleForFree" : true,
"license": {
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"name": "Attribution 4.0 International (CC BY 4.0)",
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"name": "SIB Swiss Institute of Bioinformatics",
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}
},
{
"@type": "Dataset",
"name": "A. mellifera",
"description": "amEPDnew, the Apis mellifera (honey bee) curated promoter database.",
"url": "https://epd.expasy.org/epd/A_mellifera/A_mellifera_database.php?db=A_mellifera",
"isAccessibleForFree" : true,
"license": {
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"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "D. rerio",
"description": "drEPDnew, the Danio rerio (zebrafish) curated promoter database.",
"url": "https://epd.expasy.org/epd/zebrafish/zebrafish_database.php?db=zebrafish",
"isAccessibleForFree" : true,
"license": {
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"headline": "EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era",
"datePublished": "2012-11-26"
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},
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"@type": "Organization",
"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "C. elegans",
"description": "ceEPDnew, the Caenorhabditis elegans curated promoter database.",
"url": "https://epd.expasy.org/epd/worm/worm_database.php?db=worm",
"isAccessibleForFree" : true,
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"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "A. thaliana",
"description": "atEPDnew, the Arabidopsis thaliana (thale cress) curated promoter database.",
"url": "https://epd.expasy.org/epd/arabidopsis/arabidopsis_database.php?db=arabidopsis",
"isAccessibleForFree" : true,
"license": {
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}
},
{
"@type": "Dataset",
"name": "Z. mays",
"description": "zmEPDnew, the Zea mays (corn) curated promoter database.",
"url": "https://epd.expasy.org/epd/Z_mays/Z_mays_database.php?db=Z_mays",
"isAccessibleForFree" : true,
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}
},
{
"@type": "Dataset",
"name": "S. cerevisiae",
"description": "scEPDnew, the Saccharomyces cerevisiae (baking yeast) curated promoter database.",
"url": "https://epd.expasy.org/epd/S_cerevisiae/S_cerevisiae_database.php?db=S_cerevisiae",
"isAccessibleForFree" : true,
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"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "S. pombe",
"description": "spEPDnew, the Schizosaccharomyces pombe (fission yeast) curated promoter database.",
"url": "https://epd.expasy.org/epd/S_pombe/S_pombe_database.php?db=S_pombe",
"isAccessibleForFree" : true,
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"name": "SIB Swiss Institute of Bioinformatics",
"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
},
{
"@type": "Dataset",
"name": "P. falciparum",
"description": "pfEPDnew, the Plasmodium falciparum 3D7 curated promoter database.",
"url": "https://epd.expasy.org/epd/P_falciparum/P_falciparum_database.php?db=P_falciparum",
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"@id": "https://ror.org/002n09z45",
"url":"https://sib.swiss"
}
}
]
}
......
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