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Created with Raphaël 2.2.01Nov30Oct2915Mar6Oct530Sep2928231614911Aug527Jul22213Dec19Sep726Feb241617Jan161215Dec52Nov117Oct1327Sep227Dec11Nov29AugTypov1.1.10 develop…v1.1.10 develop mainUpdate logo_rescale.pl + Fix warningsUpdate URLsMakefile takes automatically all Perl scripts for install and cleanbin rulesUpdate version to 1.1.10 + Add extra warning checks in MakefileUse defined variables for the default values in helpFix typosAdd the new logo_rescale.pl script (with warning fixes)CleaningAdd seqshuffle.cCleaningUpdate seq_extract_bcomp.c code to the last version + Add new scriptsAdd PID to unmapped.dat to make it linked to a specific pipeline runUpdate src with files from the web serverUpdate perl scripts with those from the web serverFix HTML issuesStart cleaning htmlReplace matrix_scan_parallel.py by GNU parallelAdd GNU parallel in the containerCan produc UCSC bedTry to convert to other formats but -i option looks broken for mscan_bed2sgaFix last awk bash variable callFix broken indentation in output bedProduce bed file but issues with indentation and p-values missingAdd bowtie docker commandStart adding script to replicate pwmscan web analysesAdd issue on osx-64Add command to test which arch can be built locallytypoAdd build instructions for arch with grep requirement available onlyAdd build instructions for arch with grep requirement available onlyMerge Makefile filesForce to use conda installed python2 and perlUse a specific conda Makefile to deal with hardcoded pathsRewrite a Makefile for conda specific requirementsClean pipe commandsAdd python2 #! for matrix_scan_parallel.pyCleaningbowtie 1.2.2 does not come with python2! So add it in requirementsFix destination binDir