Add TODO list

TODO

+- How many ST0 -> 20/49
+	new ones: see if ST can be assigned
+	- *.novel.* created for all samples, even if not ST0?
+	- Same alleles in _cglmst_novel and _mlst_noel? NO
+
+- Download automatically NCBI ref to update MentaLiST db
+  and re-run assigned ST(0) on them
+
+- Get matrices of SNPs/allelles distance (with tree)
+
+- New containers with RESTfinder, ...
+  (for resistance, virulence, plasmids, ...)
+
+- Container for blast(/blat/usearch) ?
+
+- License?
+
+- Wait for BioMedIT to not restart what has to be done on ULZ
+
+- Use only Python3 scripts
+
+- /scratch/cluster/projects/spsp/?    quota?
+  -> update paths
+
+- scp files in & out in Slurm commands or before/after?
+
+- Different folders for running and stored jobs!
+  -> cleaning easier only for stored jobs
+     and comparative genetics only on stored jobs!
+
+- Disk encryption but files encryption too?
+
+- time schedule for
+  - comparative genomics
+  - cleaning
+
+- scp with $SLURM_JOB_NODELIST
+  Use srun within sbatch scripts to get job (step) stats easily for independent jobs!!!
+    with --ntasks+1 to stay sequential
+