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v2.0.0
Release: Version 2.0.0d309f467 · ·Version 2.0.0 - New protein sequence translation based on alignment of sequence FluR can now work even if the start codon has not been sequenced (e.g. due to low coverage) - Signal mutation which cannot be observed (e.g. when only a small fraction of the protein's gene has been sequenced) - Discard deletions that happen in giant gaps (e.g. alignment artefacts of Muscle aligner) and reports them as low quality /!\ Breaking change /!\ - FluR now needs reference gene sequence. If you use your own custom dataset, you need to add fasta files with genes (see: official reference_datasets/ ) - FluR will consider the first start codon in the reference gene sequence as where a protein should begin translation Minor changes: - Muscle can now be used from bioconda. FluR will fall back on built-in only if no other install is detected - Pre-built Docker now available at: https://gitlab.sib.swiss/clinbio/spsp-ng/spsp-ng-bioinformatics/pipelines/influenza-resistance/container_registry/
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