Merge branch 'dev' into 'main'

Updated path of temporary files for alignment

See merge request !5

influenza_resistance_annotation.py

 #!/usr/bin/env python
 # coding: utf-8
 
-tool_version = '1.0.4'
+tool_version = '1.0.5'
 
 import platform
 import argparse
@@ -205,8 +205,8 @@ def correct_alignement_to_the_right(ref_seq, target_seq):
 
 
 def align_pairwise(ref_seq, target_seq, path_to_alignment_tool):
-    input_fasta = "input_fasta_tmp.fasta"
-    output_fasta = "output_fasta_tmp.fasta"
+    input_fasta = os.path.join('/tmp', 'input_fasta_tmp.fasta')
+    output_fasta = os.path.join('/tmp', 'output_fasta_tmp.fasta')
     cmd = (path_to_alignment_tool, "-align", input_fasta, "-output", output_fasta)
 
     seq_ref_record = SeqRecord(ref_seq, id="ref_seq", description="ref_seq")