fixed hierarchy/lineage bugs, scaled flaskapp in docker-compose and nginx

Dockerfile

Dockerfile_alpine

Dockerfile_alpine_v2

README.txt

app/conf.d/flaskapp.conf

app/conf.d/flaskapp_scaled.conf_bak

app/python/Snakefile

app/python/create_SQL_tables_snakemake.py

app/python/report.html

app/python/run.py

app/python/run_cythonized.pyx

app/python/variables.py

app/python/variables_snakemake.py

app/requirements.txt

data/PostgreSQL/copy_from_file_and_index_STRING.psql

data/PostgreSQL/temp.psql

docker-compose.yml

docker-compose_scaled.yml