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  • c1da28c8907b7cf85dfced23f30e20443c7cad1e
  • master default protected
  • PMID_autoupdate
  • STRING_v11
  • agodebian
  • autoupdates
  • dependabot/pip/app/lxml-4.6.2
  • discretize_TM_scores
  • gitlabtest
  • plotly
  • restapi
  • string
  • sund
  • v11_PMID_GED
  • v11.1
  • v11
  • v11.0
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Created with Raphaël 2.2.028Jan2522212019181514131187522Dec21201714754330Nov272623201917166330Oct292726231913128765432130Sep2928272624232221201817151410972131Aug2827261061Jul30Jun292524231610987654225May2015141312116528Apr271476130Mar272612113227Feb262114121110875424Jan20876421Dec201811109654329Nov2725417Oct18Sep121110985220Aug197631Jul30292221191511109828Jun26242018171413121065330May2928211614Apr121154315Mar141311128Feb26222120191815131211131Jan3029282226Dec26Nov23222115Oct27Sep25201812117654331Aug2924222119131098763127Jul2625201918171623May2218Apr5428Mar13Feb1298765sync before OSX updatemastermasteradded status or info to APIcleanupPMID_autoupdatePMID_autoupdateredirected Snakemake log to its own log, not to crowd the cronjob update logReadme for nginx and cleanup of 2 main branchesREST API status or info addedcleanup, updated cronjob to zerg uWSGI configfixed Snakemake rules using '--reason' flag, which enables simply rerunning single rulescleanupchanged cronjob to adapt to new uWSGI Zerg mode config on production servers San and Piscessyncadded uwsgi_params, also to .gitignoreapplying changes to uWSGI to run things in Zerg mode analogous to master branchfixed test_flatfiles but and cleanup. Deployed on agotool Aquarius, ready to change PMID_autoupdates branch and deploy on Piscesfinished stress test of agotool on Phobos, things work as expected, only uwsgiTOP is not working on 3rd reload of vassalsyncwrote bug report for uWSGIfixed UniProt Taxa and remove extremely verbose log messages for flood testsrefactored agotool API flood tests to cope with UniProt reference Proteomes and use curl instead of Perlcleanup of zerg configs, testing needed to check if multiple versions of app are serving requests simultaneously under heavy load, old versions get killed for realuWSGI Zerg mode configuration finishedsyncadded PyTest fix for edge case of FG_n being larger than BG_n when selecting random foregroundfixed PyTest: random choice of foreground can't be larger than background for random taxid, if there is no significantly enriched terms check with FDR_cutoff and p_value_cutoff of 1. Testing uWSGI zerg modeBump lxml from 4.2.1 to 4.6.2 in /appdependabot/pip/…dependabot/pip/app/lxml-4.6.2small bugfixes in cronjobtempToDo after cake meetingcleaner genomecleanup examples and formatting typossyncfixed pytestsMerge branch 'plotly'deleted: app/static/templates/success.htmlplotlyplotlysome css styling and JS cleanup, last commit before mergecss styling in processplotly edges dict in ipynb tempnot sure why this merge is necessary, simply want to fix broken cronjobfixed cronjob, wrong app diradded color bars to s_value col, need to fix column renaming and which columns to show in which order for various enrichment_methods