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Commit e907f706 authored by badozor's avatar badozor
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Update README.md

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......@@ -16,7 +16,10 @@ install.packages("mgmtstp27_0.6.tar.gz",repos=NULL)
install.packages("mgmtstp27_0.6.zip",repos=NULL)
```
The sources are avalaible [here](https://github.com/badozor/mgmtstp27/tree/master/trunk/Rpackage). The R function MGMTpredict directly provides prediction, classification and confidence intervals as illustrated below:
The sources are avalaible [here](https://github.com/badozor/mgmtstp27/tree/master/trunk/Rpackage).
## Examples ##
The R function MGMTpredict directly provides prediction, classification and confidence intervals as illustrated below:
```
# loading R packages
require(mgmtstp27)
......@@ -34,8 +37,7 @@ par(mfrow=c(2,3))
MGMTqc.pop(pred1,which.plot=1:3,mfrow=NULL)
MGMTqc.single(pred1,nsample=1,which.plot=1:3,mfrow=NULL)
```
Additional documentation is avaialble [here](https://github.com/badozor/mgmtstp27/tree/master/trunk/Rdoc):
Additional documentations are avaialble [here](https://github.com/badozor/mgmtstp27/tree/master/trunk/Rdoc):
* Introduction to R package mgmtstp27 (version 0.1, in preparation, intromgmtstp27.pdf)
* Effect of normalization on the prediction of DNA methylation status of MGMT promoter: example with HM-450K Infinium data from TCGA and the R package mgmtstp27 (version 0.1, in preparation, docmgmtstp27.pdf)
* Prediction of the DNA methylation of MGMT with raw data (format IDAT) from HM-27k (version 0.1, in preparation, MgmtPredTCGA.pdf)
......
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