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phylo
fastcodeml
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fastcodeml
Project ID: 15
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LICENSE
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Optimization strategies for fast detection of positive selection on phylogenetic trees
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Merge branch 'master-dev'
· 0a66f8ce
omid
authored
Aug 22, 2016
0a66f8ce
README
CHANGELOG
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extra_install_doc
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simpleopt
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.clang-format
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.gitignore
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AUTHORS
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AlignedAllocator.cpp
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AlignedAllocator.h
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AlignedMalloc.h
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BUGS
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BayesTest.cpp
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BayesTest.h
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BranchSiteModel.cpp
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BranchSiteModel.h
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CHANGELOG
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CMakeLists.txt
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CmdLine.cpp
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CmdLine.h
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CodeMLoptimizer.cpp
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CodeMLoptimizer.h
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CodonFrequencies.cpp
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CodonFrequencies.h
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CompilerHints.h
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DAGScheduler.cpp
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DAGScheduler.h
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Doxyfile
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ENSGT00390000016702.Primates.01.002.nwk
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ENSGT00390000016702.Primates.01.002_rooted.nwk
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ENSGT00390000016702.Primates.01.002_unrooted.nwk
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ENSGT00390000016702.Primates.01.phy
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Exceptions.h
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FatVectorTransform.cpp
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FatVectorTransform.h
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FillMatrix.cpp
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Forest.cpp
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Forest.h
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ForestExport.cpp
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ForestExport.h
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ForestNode.h
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Genes.cpp
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Genes.h
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HighLevelCoordinator.cpp
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HighLevelCoordinator.h
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INSTALL
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LICENSE
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MathSupport.h
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MatrixSize.h
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Newick.cpp
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Newick.h
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NewickGrammar.h
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ParseParameters.cpp
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ParseParameters.h
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Phylip.cpp
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Phylip.h
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PhyloTree.cpp
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PhyloTree.h
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ProbabilityMatrixSet.cpp
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ProbabilityMatrixSet.h
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README
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SETPATHS
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THANKS
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TODO
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Timer.h
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TransitionMatrix.cpp
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TransitionMatrix.h
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TreeAndSetsDependencies.cpp
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TreeAndSetsDependencies.h
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TreeNode.cpp
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TreeNode.h
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Types.h
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VerbosityLevels.cpp
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VerbosityLevels.h
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WriteResults.cpp
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WriteResults.h
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blas.h
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clean.sh
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create_tarball.sh
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fast.cpp
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fast.supp
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fastcodeml.git.kdev4
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format.sh
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genQ.r
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lapack.h
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nlopt.h
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nlopt.hpp
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README
