Commits · master · phylo / fastcodeml

22 Aug, 2016 2 commits
- Merge branch 'master-dev' · 0a66f8ce
  omid authored Aug 22, 2016
  
  0a66f8ce
- issue with -i1 · 6c0465ca
  oshahmir authored Aug 22, 2016
  
  6c0465ca
21 Jun, 2016 1 commit
- A BG/Q compatible version (can be cross-compiled with XL compiler) · f08ea9c2
  oshahmir authored Jun 21, 2016
  
  f08ea9c2
16 Jun, 2016 3 commits
- new merge from master-dev branch · 1e9fe46b
  oshahmir authored Jun 16, 2016
  
  1e9fe46b
- removing unnecessary folders · 51c4dc5b
  oshahmir authored Jun 16, 2016
  
  51c4dc5b
- Updating default compile options in CMakeLists.txt · e9c24b8d
  oshahmir authored Jun 16, 2016
  
  e9c24b8d
12 Jun, 2016 1 commit
- removing debug statements · d5169286
  oshahmir authored Jun 12, 2016
  
  d5169286
08 Jun, 2016 3 commits
- correcting compile option initializations in CMakeLists.txt to proper values (issue #33 and #34 ) · 3f7c0f9f
  oshahmir authored Jun 08, 2016
  
  3f7c0f9f
- Corrected issue 37 (misleading report of number of cores) · ab610d6b
  oshahmir authored Jun 08, 2016
  
  ab610d6b
- corrected formatting issue (#36 ) · 77615159
  oshahmir authored Jun 08, 2016
  
  77615159
07 Jun, 2016 1 commit
- Corrected issue 35 (output file not found) · f52bff01
  oshahmir authored Jun 07, 2016
  
  f52bff01
24 May, 2016 2 commits
- test · 3a492bbe
  oshahmir authored May 24, 2016
  
  3a492bbe
- test · 6c02fe2b
  omid authored May 24, 2016
  
  6c02fe2b
19 May, 2016 1 commit
- BEB correction for the case when no fg branch is marked in the nwk file · a26fed3d
  omid authored May 19, 2016
  
  a26fed3d
11 Mar, 2016 14 commits
- new merge · 8ab98271
  omid authored Mar 11, 2016
  
  8ab98271
- Updating readme and todo files · 8ad6e7b5
  omid authored Mar 11, 2016
  
  8ad6e7b5
- removing non-useful command line options · 90e1b32e
  omid authored Mar 11, 2016
  
  90e1b32e
- some cosmetic changes · 9c808087
  omid authored Mar 11, 2016
  
  9c808087
- Fully correct final tree report · e146c29f
  omid authored Mar 11, 2016
  
  e146c29f
- corrected version for printing final tree · 888258e9
  omid authored Mar 11, 2016
  
  888258e9
- More changes on the final tree report · bf5c996a
  omid authored Mar 11, 2016
  
  bf5c996a
- some changes in command line option comments as well as final printed · 57979c06
  omid authored Mar 11, 2016
```
trees
```
  57979c06
- correct version (initial num of cores) · c0b2d7bb
  omid authored Mar 11, 2016
  
  c0b2d7bb
- initial num of threads (cont.) · 621fd2b5
  omid authored Mar 11, 2016
  
  621fd2b5
- more correction on initial num of threads · 25c70bf7
  omid authored Mar 11, 2016
  
  25c70bf7
- some changes in final timing reports and initial number of threads to · 26be0e27
  omid authored Mar 11, 2016
```
prevent possible false sharing
```
  26be0e27
- more final tree report corrections · 21a4d11a
  omid authored Mar 11, 2016
  
  21a4d11a
- Some correction in reporting the final tree (based on the chosen · d6205ef5
  omid authored Mar 11, 2016
```
hypothesis)
```
  d6205ef5
04 Mar, 2016 1 commit
- correcting a bug related to initializing (using command line parameters) · 78a52c80
  omid authored Mar 04, 2016
```
when branch lengths are not set to fixed 
```
  78a52c80
02 Mar, 2016 4 commits
- updating SETPATHS · e8246a03
  omid authored Mar 02, 2016
  
  e8246a03
- updating setpaths · 5223be55
  omid authored Mar 02, 2016
  
  5223be55
- Fortmatting fast.cpp created issues. reverting to the head version of · 113d641a
  omid authored Mar 02, 2016
```
master-eval. I am not confident with current formatting solution. 
```
  113d641a
- Some extra manual formatting of automated formatted code ! · 2d9f69bb
  omid authored Mar 02, 2016
  
  2d9f69bb
29 Feb, 2016 3 commits
- merging master-eval (finished) · 42e91b83
  omid authored Feb 29, 2016
  
  42e91b83
- merging master-eval up to WriteResults.h · 6377bc04
  omid authored Feb 29, 2016
  
  6377bc04
- merging master-eval up to CodeMLOptimizer.h · 4cc63271
  omid authored Feb 29, 2016
  
  4cc63271
03 Dec, 2015 4 commits
- remove nthreads message, thread number otputed twice · f00fdf26
  Iakov Davydov authored Dec 03, 2015
  
  f00fdf26
- fix nthreads output (correct indentations) · 60998f79
  Iakov Davydov authored Dec 03, 2015
  
  60998f79
- fix minor indented formatting · 4282844a
  Iakov Davydov authored Dec 03, 2015
  
  4282844a
- fix fastcodeml output (redo 7a445d17 ) · f6f1895e
  Iakov Davydov authored Dec 03, 2015
  
  f6f1895e