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protected
a13ac99e
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Optimisation for mutithreaded uncompressed bgzf
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May 24, 2018
master
be22a2a1
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Release 1.8
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Apr 03, 2018
hts_opt_block_size
7fd21f5b
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Adds HTS_OPT_BLOCK_SIZE support for SAM/BAM/CRAM.
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Jun 18, 2017
bz2-lzma-pkgconfig
06edd7e4
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Remove explicit -lz -lm link flags; add to LIBS instead
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Mar 01, 2017
exp/raw-index
eb0b3dbb
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Add bgzf_write_chunk() and hts_itr_next_chunk() [IN PROGRESS]
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Sep 21, 2016
cram_split_tags
7c548910
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Added a fast implementation of CRC32c.
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Apr 04, 2016
configure
1ff377ab
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Documented the --with-lzma and --with-bz2 configure options.
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Mar 01, 2016
feature/contig_comma
76033a2d
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Support for quoted contig names, such as ##contig=<ID="CrazyContigName,1">
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Feb 18, 2016
parser-flags
9cffb48c
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Add hts_parse_region() with flags parameter [DRAFT]
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Sep 02, 2015
irods_update
7ff88bbb
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Work around an iRODS bug(?) regarding checksum and file updates.
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Jul 15, 2015
cigar-P-bis
95252e97
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Added bam_plp_insertion() function to work out the padded insertion
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Jun 22, 2015
cram_digests
e04c329b
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Added support for BAM style key:type:value tuples after the slice
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Apr 13, 2015
CSIv2
d69b87a3
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Support for CSIv2: merged from develop, bugfixes, tabix test
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Jan 23, 2015
ftype
140f7ea8
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Modified hts_file_type to use hpeek instead of file suffix.
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Sep 08, 2014
lite
8133545c
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lite-r228: fixes-frequent fai_fetch(); err filter
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Aug 11, 2014
norm-indels
4987a942
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vcfnorm: New command for normalizing and left-aligning indels.
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Mar 12, 2013