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Commit 53177bfb authored by James Bonfield's avatar James Bonfield
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Small speed up to cram indexing.

With slices that use the multi-ref mode (ref id -2 and tid encoded
using RI data series) we need to decode the slice, but only enough to
get rname, pos and alignment end.  We use the required fields
parameter to prevent wasting time decompressing quality values and
auxiliary tags.
parent eeda089c
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