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Canonicalise whitespace -- USE -b/-w TO DIFF/BLAME ACROSS THIS COMMIT
Expand tabs as spaces; hard tab characters are no longer to be used as there is disagreement as to how many columns they should expand to. Remove trailing whitespace at the end of lines. After this commit, please do not commit hard tab characters or trailing whitespace in .c, .h, or .pl files, and please consider using a pre-commit hook in your local repository to enforce this. These steps will minimise the incidental whitespace changes unrelated to the intended commit changes that make viewing diffs and merging less convenient. To compare files prior to and after the whitespace discontinuity of this commit, use "diff -b" or "diff -w", "blame -w", etc. (This does not apply to files in the cram/ subdirectory or the klib files k*.c and htslib/k*.h. These files are synchronised with other projects, so minimising differences with copies of this code elsewhere is more important. Please avoid accidental incidental whitespace changes in these files too.)
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- bgzf.c 469 additions, 469 deletionsbgzf.c
- bgzip.c 142 additions, 142 deletionsbgzip.c
- faidx.c 250 additions, 250 deletionsfaidx.c
- hts.c 920 additions, 920 deletionshts.c
- htslib/bgzf.h 205 additions, 205 deletionshtslib/bgzf.h
- htslib/faidx.h 59 additions, 59 deletionshtslib/faidx.h
- htslib/hts.h 69 additions, 69 deletionshtslib/hts.h
- htslib/khash_str2int.h 3 additions, 3 deletionshtslib/khash_str2int.h
- htslib/sam.h 107 additions, 107 deletionshtslib/sam.h
- htslib/synced_bcf_reader.h 27 additions, 27 deletionshtslib/synced_bcf_reader.h
- htslib/tbx.h 19 additions, 19 deletionshtslib/tbx.h
- htslib/vcf.h 209 additions, 209 deletionshtslib/vcf.h
- htslib/vcfutils.h 10 additions, 10 deletionshtslib/vcfutils.h
- sam.c 1163 additions, 1163 deletionssam.c
- synced_bcf_reader.c 49 additions, 49 deletionssynced_bcf_reader.c
- tabix.c 18 additions, 18 deletionstabix.c
- tbx.c 193 additions, 193 deletionstbx.c
- test/compare_sam.pl 39 additions, 39 deletionstest/compare_sam.pl
- test/fieldarith.c 15 additions, 15 deletionstest/fieldarith.c
- test/test-vcf-api.c 8 additions, 8 deletionstest/test-vcf-api.c
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