Commits · develop · Thierry Schuepbach / pbbam · GitLab

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Jun 02, 2018
- Merge pull request #163 in SAT/pbbam from feature/SE-1646-bioconda-updates to develop · 68f87b63
  David Seifert authored Jun 2, 2018
  View commits for tag 0.18.0 0.18.0
  
  68f87b63
- Bump version to 0.18.0 · ce0f5916
  David Seifert authored Jun 2, 2018
  
  ce0f5916
- Update bundled GTest · d6ee4b4f
  David Seifert authored Jun 2, 2018
  
  d6ee4b4f
Jun 01, 2018
- Merge pull request #162 in SAT/pbbam from feature/TAG-2411-vcf-sort to develop · d4e7abe1
  Derek Barnett authored Jun 1, 2018
  d4e7abe1
- Added VCF::SortFile(...) feature · 087ac27f
  Derek Barnett authored May 31, 2018
  
  087ac27f
May 31, 2018
- Merge pull request #161 in SAT/pbbam from feature/TAG-2411-contig-header-type to develop · ac4ef5a9
  Derek Barnett authored May 31, 2018
  ac4ef5a9
May 30, 2018
- Added direct support for VCF ##contig header lines · 1dcf8070
  Derek Barnett authored May 30, 2018
  
  1dcf8070
May 29, 2018
- Merge pull request #160 in SAT/pbbam from feature/SE-1631-More-GCC-testing to develop · 31a09e35
  David Seifert authored May 29, 2018
  31a09e35
- Fix -Wstringop-truncation · c57f5d35
  David Seifert authored May 29, 2018
  
  c57f5d35
- Fix -Wshadow · c216a736
  David Seifert authored May 29, 2018
  
  c216a736
- Test more GCC versions · 0bf4fa9f
  David Seifert authored May 29, 2018
  
  0bf4fa9f
May 28, 2018
- Merge pull request #159 in SAT/pbbam from bugfix/SE-1635-fix-vcfheader-crash to develop · 2675d30f
  Armin Toepfer authored May 28, 2018
  2675d30f
- Fixed fileDate/fileformat crash. They weren't synced up with expected general definition handling. · b72ab667
  Derek Barnett authored May 28, 2018
  
  b72ab667
May 23, 2018
- Merge pull request #157 in SAT/pbbam from feature/TAG-2384-initial-variant-api to develop · 1ec1486e
  Derek Barnett authored May 23, 2018
  1ec1486e
- Initial API framework · 3270da91
  Derek Barnett authored May 13, 2018
  
  3270da91
May 21, 2018
- Merge pull request #158 in SAT/pbbam from feature/TAG-2323-publish-coverage to develop · f42d2cfc
  Derek Barnett authored May 21, 2018
  f42d2cfc
- coverage report for bamboo · d26e2323
  Derek Barnett authored May 21, 2018
  
  d26e2323
May 08, 2018
- Merge pull request #156 in SAT/pbbam from feature/SE-1533-Update-bundled-cram-script to develop · b0f99937
  David Seifert authored May 8, 2018
  b0f99937
- Upgrade bundled cram to 0.7 · 3edf303a
  David Seifert authored May 8, 2018
  3edf303a
May 07, 2018
- Merge pull request #155 in SAT/pbbam from... · 4d04c28d
  David Seifert authored May 7, 2018
  4d04c28d
- Do not build tests when creating artifact · 8c9673f2
  David Seifert authored May 7, 2018
  
  8c9673f2
- Merge pull request #154 in SAT/pbbam from feature/SE-1533-Build-cleanup to develop · 268e4da9
  David Seifert authored May 7, 2018
  268e4da9
- Decouple build/install/test scripts from Bamboo · 74a7e96f
  David Seifert authored May 7, 2018
  
  74a7e96f
- Store test configuration in Meson · 08ce4d64
  David Seifert authored May 7, 2018
  
  08ce4d64
May 04, 2018
- Merge pull request #153 in SAT/pbbam from... · ff68e47b
  David Seifert authored May 4, 2018
  ff68e47b
- Do not propagate -W* flags to consumers · d056e581
  David Seifert authored May 4, 2018
  d056e581
May 03, 2018
- Merge pull request #152 in SAT/pbbam from feature/SE-1533-initialization to develop · 1c424f54
  Derek Barnett authored May 3, 2018
  1c424f54
- Updated all things initialization. · 067a9d9a
  Derek Barnett authored May 3, 2018
  067a9d9a
May 01, 2018
- Merge pull request #151 in SAT/pbbam from feature/SE-1533-remove-namespace-std to develop · d7a6375e
  Derek Barnett authored May 1, 2018
  d7a6375e
- Removed 'using namespace std' from tools & tests. Library source had... · 8efb0615
  Derek Barnett authored May 1, 2018
  8efb0615
Apr 29, 2018
- Merge pull request #150 in SAT/pbbam from feature/SE-1533-More-warning-flags to develop · e3ea5efc
  David Seifert authored Apr 28, 2018
  e3ea5efc
- Enable additional warnings flags in Meson · e6372d38
  David Seifert authored Apr 28, 2018
  e6372d38
- Fix -Wdouble-promotion · dc3e9569
  David Seifert authored Apr 28, 2018
  
  dc3e9569
- Fix -Wformat-nonliteral · c0cd8529
  David Seifert authored Apr 28, 2018
  
  c0cd8529
- Fix -Wuseless-cast · cbd93820
  David Seifert authored Apr 28, 2018
  
  cbd93820
- pugixml.cpp: Disable all warnings · e3f3db2c
  David Seifert authored Apr 28, 2018
  
  e3f3db2c
Apr 28, 2018
- Merge pull request #149 in SAT/pbbam from feature/SE-1533-stringstream to develop · b1e57c68
  Derek Barnett authored Apr 28, 2018
  b1e57c68
- Use {i,o}stringstream instead of plain stringstream · a235c901
  Derek Barnett authored Apr 28, 2018
  
  a235c901
- Merge pull request #148 in SAT/pbbam from feature/SE-1533-Enable-Werror to develop · 4c16f426
  David Seifert authored Apr 28, 2018
  4c16f426
- Enable -Werror in CI · c76f27c3
  David Seifert authored Apr 28, 2018
  
  c76f27c3