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Thierry Schuepbach
pbbam
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smrtlink-5.0.0
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Merge pull request #163 in SAT/pbbam from feature/SE-1646-bioconda-updates to develop
0.18.0 develop
0.18.0 develop
Bump version to 0.18.0
Update bundled GTest
Merge pull request #162 in SAT/pbbam from feature/TAG-2411-vcf-sort to develop
Added VCF::SortFile(...) feature
Merge pull request #161 in SAT/pbbam from feature/TAG-2411-contig-header-type to develop
Added direct support for VCF ##contig header lines
Merge pull request #160 in SAT/pbbam from feature/SE-1631-More-GCC-testing to develop
Fix -Wstringop-truncation
Fix -Wshadow
Test more GCC versions
Merge pull request #159 in SAT/pbbam from bugfix/SE-1635-fix-vcfheader-crash to develop
Fixed fileDate/fileformat crash. They weren't synced up with expected general definition handling.
Merge develop to master, end-of-sprint 2018.10 05/23/2018 (@ smrtlink-short_5_2_0_snapshot36228, RBS-DEVSMRTLINKSHORT-2801)
master
master
Merge pull request #157 in SAT/pbbam from feature/TAG-2384-initial-variant-api to develop
Initial API framework
Merge pull request #158 in SAT/pbbam from feature/TAG-2323-publish-coverage to develop
coverage report for bamboo
Merge develop to master, end-of-sprint 2018.09 05/09/2018 (@ smrtlink-short_5_2_0_snapshot34713, RBS-DEVSMRTLINKSHORT-2678)
Merge pull request #156 in SAT/pbbam from feature/SE-1533-Update-bundled-cram-script to develop
Upgrade bundled cram to 0.7
Merge pull request #155 in SAT/pbbam from feature/SE-1533-Disable-test-building-for-artifacts to develop
Do not build tests when creating artifact
Merge pull request #154 in SAT/pbbam from feature/SE-1533-Build-cleanup to develop
Decouple build/install/test scripts from Bamboo
Store test configuration in Meson
Merge pull request #153 in SAT/pbbam from feature/SE-1533-Remove-warning-flag-propagation to develop
Do not propagate -W* flags to consumers
Merge pull request #152 in SAT/pbbam from feature/SE-1533-initialization to develop
Updated all things initialization.
Merge pull request #151 in SAT/pbbam from feature/SE-1533-remove-namespace-std to develop
Removed 'using namespace std' from tools & tests. Library source had previously been scrubbed; these were overlooked.
Merge pull request #150 in SAT/pbbam from feature/SE-1533-More-warning-flags to develop
Enable additional warnings flags in Meson
Fix -Wdouble-promotion
Fix -Wformat-nonliteral
Fix -Wuseless-cast
pugixml.cpp: Disable all warnings
Merge pull request #149 in SAT/pbbam from feature/SE-1533-stringstream to develop
Use {i,o}stringstream instead of plain stringstream
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