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EPD
PWMScan
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67b784dd
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67b784dd
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Aug 29, 2016
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CCG Virtual Machine account
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@@ -122,11 +122,9 @@ Matrix format conversion utilities are the following:
The jasparconvert.pl and transfacconvert.pl scripts are based on an original implementation
by William Stafford Noble and Timothy L. Bailey (1999) for MEME.
We also provide three (bash) shell wrapper scripts that embed the entire analysis pipeline
using one of the three aforementioned methods:
We also provide two (bash) shell wrapper scripts that embed the entire analysis pipeline:
- pwm_bowtie_wrapper Scan a genome with a PWM and a p-value using bowtie
- pwm_gwi_wrapper Scan a genome with a PWM and a p-value using fetchGWI
- pwm_mscan_wrapper Scan a genome with a PWM and a p-value using matrix_scan
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