Commits · master · Selectome / pipeline

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Apr 09, 2024
- Merge branch 'develop' · 32699e28
  Sébastien Moretti authored Apr 9, 2024
  
  32699e28
Mar 15, 2023
- Fix weird characters in NHX tags · 1cb5b5d7
  Sébastien Moretti authored Mar 15, 2023
  
  View commits for tag v7 v7
  
  1cb5b5d7
Aug 10, 2022
- Fix for gene name like "XB5813854 [provisional:ankrd52]" · ea532f51
  Sébastien Moretti authored Aug 10, 2022
  
  ea532f51
- Add TODO · ad38da02
  Sébastien Moretti authored Aug 10, 2022
  
  ad38da02
- Add TODO · aa2f285d
  Sébastien Moretti authored Aug 10, 2022
  
  aa2f285d
- Fixes for gene names like "XB5813854 [provisional:ankrd52]" · 4f5004d4
  Sébastien Moretti authored Aug 10, 2022
  
  4f5004d4
- Improve find broken GN script · 9dfca993
  Sébastien Moretti authored Aug 10, 2022
  
  9dfca993
Aug 09, 2022
- Update NHX trees in the db based on fixed NHX files · 2e0e2fbc
  Sébastien Moretti authored Aug 9, 2022
  
  2e0e2fbc
- Merge branch 'develop' of https://gitlab.sib.swiss/Selectome/pipeline into develop · c4feea77
  Sébastien Moretti authored Aug 9, 2022
  
  c4feea77
- Add ROOT ND info · be70820f
  Sébastien Moretti authored Aug 9, 2022
  
  be70820f
- Add a script to update the gene selected field missed because of Ensembl API errors and MGP_ ids · 618b916b
  Sébastien Moretti authored Aug 9, 2022
  
  618b916b
Aug 08, 2022
- Update for new field requirements · 349ecf9c
  Sébastien Moretti authored Aug 8, 2022
  
  349ecf9c
- WIP · fec74919
  Sébastien Moretti authored Aug 8, 2022
  
  fec74919
Jul 12, 2022
- Fix version field size in tools table · 8feb03f1
  Sébastien Moretti authored Jul 12, 2022
  
  8feb03f1
Mar 23, 2022
- Add Gamma rate option for godon M8 tests · 09ac0159
  Sebastien Moretti authored Mar 23, 2022
  
  09ac0159
Mar 22, 2022
- Fix few issues to run godon M8 tests · acf7645b
  Sebastien Moretti authored Mar 22, 2022
  
  acf7645b
- Add godon M8 test · c474796a
  Sébastien Moretti authored Mar 22, 2022
  
  c474796a
Mar 16, 2022
- Update node2gene table from the fixed NHX files · e211aba3
  Sébastien Moretti authored Mar 16, 2022
  
  e211aba3
Mar 09, 2022
- Skip prots and branches already in node2gene · 347d2e2b
  Sébastien Moretti authored Mar 9, 2022
  
  347d2e2b
- Cleaning · c9e4527f
  Sébastien Moretti authored Mar 9, 2022
  
  c9e4527f
- Add pseudo-root checks · 7f15a4f3
  Sébastien Moretti authored Mar 9, 2022
  
  7f15a4f3
- Start update_node2gene_from_NHX_files.pl + New datasets for get_selection_from_gene_list · dff142b4
  Sébastien Moretti authored Mar 9, 2022
  
  dff142b4
Mar 08, 2022
- Cleaning · 8a87335e
  Sébastien Moretti authored Mar 8, 2022
  
  8a87335e
Mar 01, 2022
- Simplify code + Set is_root=1 here · 5b9b0dd8
  Sébastien Moretti authored Mar 1, 2022
  
  5b9b0dd8
- Cleaning · 2488db36
  Sébastien Moretti authored Mar 1, 2022
  
  2488db36
Feb 16, 2022
- Start script to update the NHX trees in db and in /var/SELECTOME/ · 82998be5
  Sébastien Moretti authored Feb 16, 2022
  
  82998be5
Feb 15, 2022
- Add timema example db name · b178e5a1
  Sébastien Moretti authored Feb 15, 2022
  
  b178e5a1
- Avoid id without trees (e.g. warnings) · b0aa1caf
  Sébastien Moretti authored Feb 15, 2022
  
  b0aa1caf
Feb 14, 2022
- Fix path for Timema · 93e00989
  Sébastien Moretti authored Feb 14, 2022
  
  93e00989
Feb 09, 2022
- Add protein leaf label when none · fe439b68
  Sébastien Moretti authored Feb 9, 2022
  
  fe439b68
Feb 08, 2022
- Fix warnings · 0f63efcf
  Sébastien Moretti authored Feb 8, 2022
  
  0f63efcf
- Add insertions · ff3e9580
  Sébastien Moretti authored Feb 8, 2022
  
  ff3e9580
- Get missing fields · 23b3147c
  Sébastien Moretti authored Feb 8, 2022
  
  23b3147c
Feb 07, 2022
- Get deprecated gene missing info · 53b9a672
  Sébastien Moretti authored Feb 7, 2022
  
  53b9a672
Feb 02, 2022
- Strat using Ensembl Perl API to get deprecated gene info · 5f29ce8c
  Sébastien Moretti authored Feb 2, 2022
  
  5f29ce8c
- Start script to add missing (mostly deprecated) genes · f0d8e965
  Sébastien Moretti authored Feb 2, 2022
  
  f0d8e965
Jan 19, 2022
- Remove empty GN (also for display) · 906ac6c2
  Sébastien Moretti authored Jan 19, 2022
  
  906ac6c2
- Fix /var/SELECTOME path for Euteleostomi + Disconnect properly from db · 835d2089
  Sébastien Moretti authored Jan 19, 2022
  
  835d2089
- Fix own Perl lib path · 4ec32d68
  Sébastien Moretti authored Jan 19, 2022
  
  4ec32d68
- Fix own Perl lib path · 5da8421a
  Sébastien Moretti authored Jan 19, 2022
  
  5da8421a