README

README.md

@@ -3,22 +3,22 @@ New cli script gvnc.py is added.
 
   This script checks through the given source db collection, generate new
   VARIANTs containing CALLs, and put them in the destination db collection.  
-  
+
   >NOTE: Please manually create the destination collection to avoid
   accidental overwritting of existing collection.  
-  
+
   >WARNING: This script will overwrite the destination db collection, check
   before running.  
-  
+
   >Example: python3 gvnc.py --demo 1000 --dnw --log log.txt This will run for
   1000 valid samples, the result wont be written to the database, and any
   error or warning messages will be shown in log.txt.
 
 
 ## Options:
-*  `-db,     --dbname TEXT              The name of the database, default is arraymap`
-*  `-src,    --collection_src TEXT      The collection to read from, default is samples`
-*  `-dst,    --collection_dst TEXT      The collection to write into, default is myvariants`
+*  `-db,     --dbname TEXT              The name of the database, default is "arraymap"`
+*  `-src,    --collection_src TEXT      The collection to read from, default is "samples"`
+*  `-dst,    --collection_dst TEXT      The collection to write into, default is "variants"`
 *  `--demo   INTEGER RANGE              Only process a limited number of entries`
 *  `--dnw                               Do Not Write to the db`
 *  `--log    FILENAME                   Output errors and warnings to a log file`