Get Bioconductor or CRAN R package information and produce an RPM spec file.

Beacon implementation on top of arraymap.org

Angular part of the public interface

The web client based on the Vue.js framework for the Swiss Pathogen Surveillance Platform

ENA data submission from GISAID metadata

Optimization strategies for fast detection of positive selection on phylogenetic trees

A RESTFul web app in PHP / Angular that handles user accounts, groups, projects and experiments. Files can be uploaded in experiments. Download requests is also implemented.

This is the backend part implemented in SLIM / PHP

A RESTFul web app in PHP / Angular that handles user accounts, groups, projects and experiments. Files can be uploaded in experiments. Download requests is also implemented. This is the frontend part implemented in angular / restangular.

Post-process cell immunofluorescence data produced by the inForm software.

proteomics tools for GO-term or UniProt-keyword enrichment

Tools and pipelines for data processing

The transfer-tool for the Swiss Pathogen Surveillance Platform

various scripting tools

FastEpistasis, a software tool capable of computing tests of epistasis for a large number of SNP pairs, is an efficient parallel extension to the PLINK epistasis module.

Get started with your own dotfiles. https://driesvints.com/blog/getting-started-with-dotfiles

Web app for visualizing pathogen evolution