Remove GRCh36 for now, because the assembly does not seems to be in the MongoDB

app/node-app/arraymap-beacon/v0.3/beacon-query.js

@@ -2,11 +2,17 @@ var info = require('./beacon-info.js').info
 
 //check https://genome.ucsc.edu/FAQ/FAQreleases.html
 var referenceMap = {
+    'GRCh38': 'SEGMENTS_HG38',
+    'GRCh37': 'SEGMENTS_HG19'
+};
+
+
+/*var referenceMap = {
     'GRCh38': 'SEGMENTS_HG38',
     'GRCh37': 'SEGMENTS_HG19',
     'GRCh36': 'SEGMENTS_HG18'
 };
-
+*/
 //correspondence to arraymap class
 var alternateBasesMap = {
     "DEL": -1,
@@ -15,7 +21,7 @@ var alternateBasesMap = {
 
 // By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
 //TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?    
-var defaultReference = 'GRCh36';
+var defaultReference = 'GRCh38';
 
 function checkPreconditions(params) {
     

app/node-app/public/js/index.js

@@ -15,7 +15,8 @@ arrayMap.config(['$routeProvider', '$locationProvider',
 
 arrayMap.controller('BeaconController', ['$scope', '$location', function ($scope, $location) {
 
-    $scope.references = ['GRCh38','GRCh37','GRCh36'];
+    //$scope.references = ['GRCh38','GRCh37','GRCh36'];
+    $scope.references = ['GRCh38','GRCh37'];
 
     $scope.config = {
         "chromosome": "",