Commits · 1e9fe46b903baf06851443785b7dbd8b02eef81b · phylo / fastcodeml

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Jun 08, 2016
- corrected formatting issue (#36 ) · 77615159
  oshahmir authored Jun 8, 2016
  
  77615159
Jun 07, 2016
- Corrected issue 35 (output file not found) · f52bff01
  oshahmir authored Jun 7, 2016
  
  f52bff01
Feb 29, 2016
- merging master-eval up to WriteResults.h · 6377bc04
  omid authored Feb 29, 2016
  
  6377bc04
Dec 03, 2015
- fix multiple angular brackets and some comments formatting · a7c7aee6
  Iakov Davydov authored Dec 3, 2015
  
  a7c7aee6
- apply formatting to 5e1e24c9 · d640fabf
  Iakov Davydov authored Dec 3, 2015
  
  d640fabf
- format all the code · 654e04d9
  Iakov Davydov authored Dec 3, 2015
  
  654e04d9
Mar 26, 2015
- remove trailing spaces from .cpp and .h files · c3d6fe8a
  Iakov Davydov authored Mar 26, 2015
  
  c3d6fe8a
- spaces to tabs · 2589ab54
  Iakov Davydov authored Mar 26, 2015
  
  2589ab54
- dos2unix all files · 5e1e24c9
  Iakov Davydov authored Mar 26, 2015
  
  5e1e24c9
Jun 27, 2014
- 1.2.0 - BG/Q compatibility (V.Keller, K.Ali) · 4b0557fe
  kali authored Jun 27, 2014
  4b0557fe
Mar 27, 2014
- -np (no paraller) readded · 5a383e68
  akalantz authored Mar 27, 2014
  5a383e68
Apr 25, 2013
- Added codon frequency table print connected to the verbose value. · 9ec41ac4
  mvalle authored Apr 25, 2013
  9ec41ac4
Apr 24, 2013
- Fixed codon frequencies calculation for ambiguous codons · 7c30fd34
  mvalle authored Apr 24, 2013
  7c30fd34
Apr 22, 2013
- Fixed case with codon frequencies equal zero · bf00228f
  mvalle authored Apr 22, 2013
  bf00228f
Feb 07, 2013
- Implemented CPV scaling · 74cadc80
  mvalle authored Feb 7, 2013
  74cadc80
Feb 05, 2013
- Removed global scaling code · 53d56791
  mvalle authored Feb 5, 2013
  53d56791
Jan 24, 2013
- Fixed various typos in doxygen comments and in two exception messages. · 94715e19
  mvalle authored Jan 24, 2013
  94715e19
- Updated doxygen to 1.8.3.1 · 0d0f30a0
  mvalle authored Jan 24, 2013
  0d0f30a0
Jan 10, 2013
- Removed commented code · a8f82c78
  mvalle authored Jan 10, 2013
  a8f82c78
Dec 12, 2012
- Changed message output to cout from cerr. · ee5c527a
  mvalle authored Dec 12, 2012
  ee5c527a
Dec 11, 2012
- Fixed problem with ambiguous codons. · ad0c251f
  mvalle authored Dec 11, 2012
  ad0c251f
Dec 06, 2012
- Added print num internal branches · 40acf8ea
  mvalle authored Dec 6, 2012
  40acf8ea
Nov 24, 2012
- Removed testing code · 0b424b4e
  mvalle authored Nov 24, 2012
  0b424b4e
Nov 06, 2012
- Added support for ambiguous codons. · d1d7c9b6
  mvalle authored Nov 6, 2012
  d1d7c9b6
Oct 29, 2012
- Added mapping sites to original number · 85489f15
  mvalle authored Oct 29, 2012
  85489f15
Oct 25, 2012
- Refactory changes (especially in Ming2) · ead0e2ec
  mvalle authored Oct 25, 2012
  ead0e2ec
Oct 19, 2012
- Changed loading of std::map for efficiency. · 76ad1f34
  mvalle authored Oct 19, 2012
  76ad1f34
Oct 18, 2012
- Added check for zero valid sites · 8ce34773
  mvalle authored Oct 18, 2012
  8ce34773
Oct 14, 2012
- Added exception for bad_alloc · 8fb3a6c0
  mvalle authored Oct 14, 2012
  8fb3a6c0
Oct 09, 2012
- Cleared unused or moved code. · 038bec91
  mvalle authored Oct 9, 2012
  038bec91
Oct 02, 2012
- As default the multiplication with codon frequencies has been moved up one level · bdbb5567
  mvalle authored Oct 2, 2012
  bdbb5567
Sep 28, 2012
- Added one sanity check · ec3949a1
  mvalle authored Sep 28, 2012
  ec3949a1
Sep 14, 2012
- Added option and code to apply subtree reuse to blocks instead to the full set of sites. · 9aee26c9
  mvalle authored Sep 14, 2012
  9aee26c9
Sep 11, 2012
- Added OpenMP TASK use · 7017caa7
  mvalle authored Sep 11, 2012
  7017caa7
Sep 10, 2012
- Split Srobability matrix class in two (one for each hypothesis) · ccae1609
  mvalle authored Sep 10, 2012
  ccae1609
Sep 04, 2012
- Reduced size few ForestNode variables · 4f0d3f08
  mvalle authored Sep 4, 2012
  4f0d3f08
Aug 28, 2012
- Fixed Cmake problem if math lib present and not use_lapack · 9a85471a
  mvalle authored Aug 28, 2012
  9a85471a
Aug 23, 2012
- Small improvements to reduce warnings from compilers · b26f4d29
  mvalle authored Aug 23, 2012
  b26f4d29
Aug 21, 2012
- Fixed omp schedule · 79a3b48f
  mvalle authored Aug 21, 2012
  79a3b48f
Jul 27, 2012
- Better measurement of the computational effort per site. · 4b4d4d8a
  mvalle authored Jul 27, 2012
  4b4d4d8a