Commits · Lucas_optimizer · phylo / fastcodeml · GitLab

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Jul 23, 2015
- Parameter changed to const · fcca0150
  Mario Valle authored Jul 23, 2015
  
  fcca0150
- Changed line ending · 489e7d8e
  Mario Valle authored Jul 23, 2015
  
  489e7d8e
- Documented the distributions extracted from Selectome · 88d37da0
  Lucas authored Jul 23, 2015
  
  88d37da0
- Removed a define in BootstrapRandom and cleaned the class · 4d7023d0
  Lucas authored Jul 23, 2015
  
  4d7023d0
- Added precisions about the Himmelbau termination criterion in the command line/comments in fast.cpp · 996495f9
  Lucas authored Jul 23, 2015
  
  996495f9
- Reduced range for few variables. Corrected initialization order for OptSQP class · 83c70704
  Mario Valle authored Jul 23, 2015
  
  83c70704
- Merged latest corrections from Lucas · 800cda08
  Mario Valle authored Jul 23, 2015
  
  800cda08
- Removed unneeded include files. Added missing initializations in few constructors · ac25c1c0
  Mario Valle authored Jul 23, 2015
  
  ac25c1c0
Jul 17, 2015
- Cleaned the BootstrapRandom file by removing useless/unefficient methods. · 6726847c
  Lucas authored Jul 17, 2015
  
  6726847c
- Added more specific comments in BOXCQP · 4019801c
  Lucas authored Jul 17, 2015
  
  4019801c
- Cleaned the BOXCQP class by removing the old solver. · 13242780
  Lucas authored Jul 17, 2015
  
  13242780
- Removed useless #define · 4f8552e5
  Lucas authored Jul 17, 2015
  
  4f8552e5
Jul 16, 2015
- Added the argument option --himmelblau-termination, which is an optional... · 73a146ea
  Lucas authored Jul 16, 2015
  73a146ea
- Merged Lucas modifications and cleanup · 9d70c3cf
  Mario Valle authored Jul 16, 2015
  
  9d70c3cf
- Removed all the unneeded classes (experimental optimizers). · f6ec3efd
  Lucas authored Jul 16, 2015
  f6ec3efd
- Removed unnnecessary #if in OptSQP · 946f1776
  Lucas authored Jul 16, 2015
  
  946f1776
Jul 15, 2015
- Cleaned the SQP class further, added const where needed, comment where needed · 81021771
  Lucas authored Jul 15, 2015
  
  81021771
Jul 10, 2015
- Limitted the memory consumption by dealocating the bootstrapper before optimizing · 3fb75132
  Lucas authored Jul 10, 2015
  
  3fb75132
Jul 09, 2015
- Cleaned OptSQP by removing the scaling option (useless, has no effects) · 09d8da5d
  Lucas authored Jul 9, 2015
  
  09d8da5d
Jul 08, 2015
- Changed the name of bootstrap 'evolutionary strategy' to 'genetic algorithm',... · b71c284f
  Lucas authored Jul 8, 2015
  b71c284f
Jul 07, 2015
- Cleaned BOXCQP · 6dc62d4e
  Lucas authored Jul 7, 2015
  
  6dc62d4e
- Merge branch 'SQP_SR1' into Lucas · 50f16074
  Lucas authored Jul 7, 2015
  50f16074
- Cleaned messages OptSQP and BOXCQP. replaced error messages cout by cerr. · 5b66b571
  Lucas authored Jul 7, 2015
  
  5b66b571
Jul 06, 2015
- Added the possibility to use a gradient descent instead of the conjugate... · 2a2b9565
  Lucas authored Jul 6, 2015
  2a2b9565
- The negative curvatures create problems. · 9a49f3d3
  Lucas authored Jul 6, 2015
  9a49f3d3
- Debugged the SR1 code. · 14bf02dd
  Lucas authored Jul 6, 2015
  14bf02dd
Jun 26, 2015
- Coded the SPG and line search algorithms. · 1b16ef3c
  Lucas authored Jun 26, 2015
  1b16ef3c
- Improved the stopping criterion. · 048d891b
  Lucas authored Jun 26, 2015
  048d891b
Jun 25, 2015
- Taking the code for computing the cauchy point from Lucas branch · b319e330
  Lucas authored Jun 25, 2015
  
  b319e330
- Coded a new conjugate gradient for the SR1 update. Have to improve it by only... · 691d39a7
  Lucas authored Jun 25, 2015
  691d39a7
Jun 24, 2015
- Cleaned the OptSQP.cpp · 4e17bb19
  Lucas authored Jun 24, 2015
  
  4e17bb19
- Merged with the hessian modification branch · 534d655f
  Lucas authored Jun 24, 2015
  
  534d655f
- After testing, fixed final parameters. · 75f07bdf
  Lucas authored Jun 24, 2015
  
  75f07bdf
Jun 23, 2015
- Changed the coefficients for the modifications so it fits to a larger class of problems. · 60fe533c
  Lucas authored Jun 23, 2015
  60fe533c
- More efficient and more accurate method to estimate the condition number of the hessian matrix · 55fa2240
  Lucas authored Jun 23, 2015
  55fa2240
- Improved the scaling factor for modifying the hessian matrix approximation. · d198003a
  Lucas authored Jun 23, 2015
  d198003a
- Improved the QP solver robustness by changing the linear solver of lapack. It... · 31e2f93a
  Lucas authored Jun 23, 2015
  31e2f93a
Jun 22, 2015
- Starting a new branch for better hessian modification, i.e. smaller changes... · a7e3ad16
  Lucas authored Jun 22, 2015
  a7e3ad16
- Bug fixes in the computaion of the general Cauchy point. · c2b8b9db
  Lucas authored Jun 22, 2015
  c2b8b9db
- SR1 with line search is now converging, but really slow convergence. · 11d03ef7
  Lucas authored Jun 22, 2015
  
  11d03ef7